View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_high_23 (Length: 227)
Name: NF20585_high_23
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2999124 - 2998902
Alignment:
| Q |
7 |
cgtaactgagcagacgataaacgggactaaagttttctttgacaatctatttgtctcagttatagatcaatnnnnnnnnnnnnnna--aacatgtttaaa |
104 |
Q |
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| T |
2999124 |
cgtaactgaacagacgataaacgggactaaaattttctttgacaatctatttgtctcagttatatatatatatatatatatatatataaacatgtttaaa |
2999025 |
T |
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| Q |
105 |
ttctctatccataccaaaaaatttcagtcagtatttagaattttcaatttacaacattaaacacataacttatactataataaataattgctgatattaa |
204 |
Q |
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| T |
2999024 |
ttctctatccataccaaaaattttcagtcagtatttagaattttcaatttacaacattaaacacataacttatactataataaataattgctgatattaa |
2998925 |
T |
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| Q |
205 |
tttgatttgggaatgaagtagca |
227 |
Q |
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| T |
2998924 |
tttgatttgggaatgaagtagca |
2998902 |
T |
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Back To:
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 32717947 - 32717823
Alignment:
| Q |
92 |
aaacatgtttaaattctctatccataccaaaaaatttcagtcagtatttagaattttcaatttacaacattaaacacataacttatactataataaataa |
191 |
Q |
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| T |
32717947 |
aaacatgtttacttcctctatccataccaaagtttttctgtcagtatttagaattttcaattgacaacattaaacacgcaacttatagcataataaataa |
32717848 |
T |
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| Q |
192 |
ttgctgatattaatttgatttgggaa |
217 |
Q |
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| T |
32717847 |
tt-cttatattaatttgatttgggaa |
32717823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 32705843 - 32705776
Alignment:
| Q |
8 |
gtaactgagcagacgataaacgggactaaagttttctttgacaatctatttgtctcagttatagatca |
75 |
Q |
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| T |
32705843 |
gtaactcaacagacaataaactggactcaaattttctttcacaatctatttgtctcggttatagatca |
32705776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 34915592 - 34915671
Alignment:
| Q |
97 |
tgtttaaattctctatccataccaaaaaatttcagtcagtatttagaattttcaatttacaacattaaacacataactta |
176 |
Q |
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| T |
34915592 |
tgtttacattctttatccatactaaaaaaattctgtcagtatttccaattttccatttacaacattacacacataactta |
34915671 |
T |
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