View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_high_6 (Length: 380)
Name: NF20585_high_6
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 55300786 - 55301149
Alignment:
| Q |
1 |
agcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaatt |
100 |
Q |
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| T |
55300786 |
agcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaacaatt |
55300885 |
T |
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| Q |
101 |
ttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcatttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaa |
200 |
Q |
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| T |
55300886 |
ttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcctttgagggagagagtaacatcaaattcggagacagtattgtcacaacaagaaa |
55300985 |
T |
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| Q |
201 |
atgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaa |
300 |
Q |
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| T |
55300986 |
atgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttgggaa |
55301085 |
T |
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| Q |
301 |
tgagaatgtactaataaatacagagacaacagatttgaaagaggaactcagagacttttggttg |
364 |
Q |
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| T |
55301086 |
tgagaatgtactaataaatacagagacaacaggtttgaaagaggaactcagagacttttggttg |
55301149 |
T |
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