View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_high_8 (Length: 374)
Name: NF20585_high_8
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 186 - 374
Target Start/End: Original strand, 38829570 - 38829758
Alignment:
| Q |
186 |
gatttgttattatatggggaatttgcagcatcagaattgtttagttcacttgaacatgaatatgattcaggacttgtttgatcataatcagcattagatg |
285 |
Q |
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| T |
38829570 |
gatttgttattatatggggaatttgcatcatcagaattgtttagttcacttgaacatgaatatgattcaggacttgtttgatcataatcagcattagatg |
38829669 |
T |
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| Q |
286 |
cattctcaattccagtgtacaggaatatctctgcatctggtattctaaatgaagtcccaggactacctccatttacatttatttggatc |
374 |
Q |
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| T |
38829670 |
cattctcaattccagtgtacaggaatatctctgcatctggtattctaaatgaagtcccaggactacctccacttacatttatttggatc |
38829758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 38830098 - 38829926
Alignment:
| Q |
19 |
tagacaagcataccgaactcatgaagcagttggtgagcgaaaagattgtgaagacgcaagacatcatcaatgttaagaacaacgatggaagaaccgctct |
118 |
Q |
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| T |
38830098 |
tagacaagcataccgaactcatgaagcagttggtgagcgaaaagattgtgaagacgcaagacatcatcaatgttaagaacaacgatggaagaaccgctct |
38829999 |
T |
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| Q |
119 |
tcatgtatccctgattgagaacatccaatgtgaggtggtggagttgttgatgtctgtgccatcaattgatttg |
191 |
Q |
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| T |
38829998 |
tcatgtatctgtgattgagaacatccaatgtgaggtggtggagttgttgatgtctgtgccatcaattgatttg |
38829926 |
T |
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