View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20585_low_1 (Length: 558)
Name: NF20585_low_1
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 234 - 551
Target Start/End: Original strand, 22898565 - 22898882
Alignment:
| Q |
234 |
ctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaacatgagcataaacgactcagcagc |
333 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22898565 |
ctcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcataaagacatggataaaatcagcaaacatgagcataaacgactcagcagc |
22898664 |
T |
|
| Q |
334 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaattcggcagccatacaat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22898665 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaattcggcagccatacagt |
22898764 |
T |
|
| Q |
434 |
atacacaaatgacaaggcaacataatatacttacaatgctctccttgctcattaactcctccacttgctacagtccttgcacttgggctttgaatgctat |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22898765 |
atacacaaatgacaaggcaacataatatacttacaatgctctccttgttcattaactcctccacttgctacagtccttgcacctgggctttgaatgctat |
22898864 |
T |
|
| Q |
534 |
taacctcttgattcatct |
551 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22898865 |
taacctcttgattcatct |
22898882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 22898259 - 22898668
Alignment:
| Q |
18 |
gatgctgctgcaccagcttcattatttaaaaatttattaggtgagtattaaatatttaagggtgtgtattaatagatataaagtgtgtttattagattta |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898259 |
gatgctgccgcaccagcttcattatttaaaaatttattagatgagtattaaatatttaagggtgtgtattaatagatataaagtgtgtttattagattta |
22898358 |
T |
|
| Q |
118 |
aagtgtatttattaatcatttacctcaactttaggactgtaataatgtttaagggtgtgtaaaaaagttttaagtgtgtatagtaatcatttagcctgtc |
217 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898359 |
aagtgtgtttattaatcatttaccccaactttatgactgtaataatgtttaagggtgtgtaaaaaagttttaagtgtgtatagtaatcatttagcctgtc |
22898458 |
T |
|
| Q |
218 |
ctcgagcatnnnnnnnctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaacatgagca |
317 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
22898459 |
ctcaagcat-aaaaaactcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcataaagacatggaaaaaatcagcaaacatgagca |
22898557 |
T |
|
| Q |
318 |
taaacgactcagcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaat |
417 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||| |||| ||||| ||| ||| ||||||||| ||| | |
|
|
| T |
22898558 |
taaaaaactcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcat-aaagacatggataaaatcagcaaacatgagcataaacgac |
22898656 |
T |
|
| Q |
418 |
tcggcagccata |
429 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
22898657 |
tcagcagccata |
22898668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 15978430 - 15978517
Alignment:
| Q |
328 |
agcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaa |
416 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||| | |||||| ||||| |||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
15978430 |
agcatccataagcataaaaaatcatgcataaactcaacaaaatgtgcc-caaaaacatagataaactcaacaaacatgagcatcaacaa |
15978517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 234 - 551
Target Start/End: Original strand, 16307629 - 16307946
Alignment:
| Q |
234 |
ctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaacatgagcataaacgactcagcagc |
333 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
16307629 |
ctcagcagccatagccattaaaagtcatgcagaaattcaacaaagtgtgcataaagacatagataaaatcagcaaacatgagcataaacaactcagcagc |
16307728 |
T |
|
| Q |
334 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaattcggcagccatacaat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
16307729 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcattagcatcaacaattcggcagccatacagt |
16307828 |
T |
|
| Q |
434 |
atacacaaatgacaaggcaacataatatacttacaatgctctccttgctcattaactcctccacttgctacagtccttgcacttgggctttgaatgctat |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16307829 |
atacacaaatgacaaggcaacataatatacttacaatgctctccttgctcattaactcctccacttgctacagtccttgcacttgggctttgaatgttat |
16307928 |
T |
|
| Q |
534 |
taacctcttgattcatct |
551 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16307929 |
taacctcttgattcatct |
16307946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 16300762 - 16301052
Alignment:
| Q |
18 |
gatgctgctgcaccagcttcattatttaaaaatttattaggtgagtattaaatatttaagggtgtgtattaatagatataaagtgtgtttattagattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16300762 |
gatgctgctgcaccagcttcattatttataaatttattaggtgagtattaaatatttaagggtgtgtattaatagatataaagtgtgtttattagattta |
16300861 |
T |
|
| Q |
118 |
aagtgtatttattaatcatttacctcaactttaggactgtaataatgtttaagggtgtgtaaaaaagttttaagtgtgtatagtaatcatttagcctgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16300862 |
aagtgtatttattaatcatttaccccaactttaggactgtaataatgtttaagggtgtgtaaaaaagttttaagtgtttatagtaatcatttagcctgtc |
16300961 |
T |
|
| Q |
218 |
ctcgagcatnnnnnnnctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaa |
309 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
16300962 |
cttgagcat-aaaaaactcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcataaagacatggaaaaaatcagcaaa |
16301052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 234 - 429
Target Start/End: Original strand, 16307538 - 16307732
Alignment:
| Q |
234 |
ctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaacatgagcataaacgactcagcagc |
333 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||| | |||||||||| |
|
|
| T |
16307538 |
ctcagcagctatagccattaaaagtcatgcataaattcaacaaagtgtgcataaagacatggaaaaaatcagcaaacatgagcatacaaaactcagcagc |
16307637 |
T |
|
| Q |
334 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaacaattcggcagccata |
429 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||| |||| ||| ||||| ||| ||| ||||||||| ||||| || ||||||||| |
|
|
| T |
16307638 |
catagccattaaaagtcatgcagaaattcaacaaagtgtgcat-aaagacatagataaaatcagcaaacatgagcataaacaactcagcagccata |
16307732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 16307447 - 16307622
Alignment:
| Q |
234 |
ctcagcagccatatccattaaaagtcaggcataaatacaacaaagtgtgcataaggacatggataaaataagcaaacatgagcataaacgactcagcagc |
333 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |||||||||| |
|
|
| T |
16307447 |
ctcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcataaagacatggaaaaaatcagcaaatatgagcatacaaaactcagcagc |
16307546 |
T |
|
| Q |
334 |
cataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcat |
410 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||||| |||| |||| | ||| ||| ||| ||||||||| |
|
|
| T |
16307547 |
tatagccattaaaagtcatgcataaattcaacaaagtgtgcat-aaagacatggaaaaaatcagcaaacatgagcat |
16307622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 16300964 - 16301028
Alignment:
| Q |
312 |
tgagcataaacgactcagcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcat |
376 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
16300964 |
tgagcataaaaaactcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcat |
16301028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 16307436 - 16307498
Alignment:
| Q |
314 |
agcataaacgactcagcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcat |
376 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
16307436 |
agcataaaaaactcagcagccatagccattaaaagtcatgcataaattcaacaaagtgtgcat |
16307498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 304 - 551
Target Start/End: Original strand, 19974993 - 19975240
Alignment:
| Q |
304 |
agcaaacatgagcataaacgactcagcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19974993 |
agcaaacatgagcataaacgactcagcagccataggcattaaaaatcatgcataaatttaacaaagtgtgcatcaaagccatgaataaactcaacaagca |
19975092 |
T |
|
| Q |
404 |
tgagcatcaacaattcggcagccatacaatatacacaaatgacaaggcaacataatatacttacaatgctctccttgctcattaactcctccacttgcta |
503 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975093 |
tgagcatcaacatttcggcagccatacaatatacacaaatgacaaggcaacataatatacttacaatgctctccttgctcattaactcctccacttgcta |
19975192 |
T |
|
| Q |
504 |
cagtccttgcacttgggctttgaatgctattaacctcttgattcatct |
551 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975193 |
gagtccttgcacctgggctttgaatgctattaacctcttgattcatct |
19975240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 14085690 - 14085737
Alignment:
| Q |
363 |
aacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcat |
410 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
14085690 |
aacaaagtatgcatcaaagacatggataaactcaacaagcataagcat |
14085737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University