View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20585_low_10 (Length: 299)

Name: NF20585_low_10
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20585_low_10
NF20585_low_10
[»] chr3 (1 HSPs)
chr3 (11-299)||(38829470-38829758)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 38829470 - 38829758
Alignment:
Q  11 atcatcatcttccatttctgagaaagttgtttttgtgtcttttcttctaggccaccttagaagagactttaagcgccttgcagcataattgacagagttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38829470 atcatcatcttccatttctgagaaagttgtttttgtgtcttttcttctaggccaccttagaagaaactttaagcgccttgcagcataattgacagagttc 38829569  T
Q  111 gatttgttattatatggggaatttgcagcatcagaattgtttagttcacttgaacatgaatatgattcaggacttgtttgatcataatcagcattagatg 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38829570 gatttgttattatatggggaatttgcatcatcagaattgtttagttcacttgaacatgaatatgattcaggacttgtttgatcataatcagcattagatg 38829669  T
Q  211 cattctcaattccagtgtacaggaatatctctgcatctggtattctaaatgaagtcccaggactacctccatttacatttatttggatc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38829670 cattctcaattccagtgtacaggaatatctctgcatctggtattctaaatgaagtcccaggactacctccacttacatttatttggatc 38829758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University