View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20585_low_11 (Length: 271)
Name: NF20585_low_11
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 39 - 262
Target Start/End: Complemental strand, 42697746 - 42697523
Alignment:
| Q |
39 |
ttatgctcatggaagcaagaacaattacgttctaatcccatctaatcagtttttctctaaattaatttgctttatgaaaaatctacaccttgtttggagg |
138 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42697746 |
ttatgctcatagaagcaagaacaattacgttctaatcccatctaatcagtttttctcataattaatttgctttatgaaaaatctacaccttgtttggagg |
42697647 |
T |
|
| Q |
139 |
agaatccaaaaccatttcatttatgattaaaggataatacatgtaggtggatgataaaatatttgggtattaggggttgttcaagtcatgaactcggaat |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42697646 |
agaaatcaaaaccatttcatttatgattaaaggataatacatgtaggtggatgataaaatatttggggattaggggttgttcaagtcatgaactcggaat |
42697547 |
T |
|
| Q |
239 |
tatcagtgaagacaaaagaataat |
262 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
42697546 |
tattagtgaagataaaagaataat |
42697523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 41987025 - 41987260
Alignment:
| Q |
19 |
tattatacctagcaaatgagttatgctcatggaagcaagaacaattacgttctaatcccatctaatcagtttttctctaaattaatttgctttatgaaaa |
118 |
Q |
| |
|
|||||| |||| |||||||||||| |||| | | |||||||||||| || ||||| |||||||||| |||||||| ||||| ||||||||||| ||| |
|
|
| T |
41987025 |
tattatccctatcaaatgagttatactcacgaga-caagaacaattatattttaatctcatctaatcaatttttctcataattattttgctttatggaaa |
41987123 |
T |
|
| Q |
119 |
atctacaccttgtttggaggagaatccaaaaccatttcatttatgattaaagg----ataatacatgtaggtggatgataaaatatttgggtattagggg |
214 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| | |||||||||||||||||| ||||| ||||||||| |||||||| |||||||| |
|
|
| T |
41987124 |
atctacaccttatttgggggagaaatcaaaacaaattcatttatgattaaaggatatataatgcatgtaggt-----------tatttggggattagggg |
41987212 |
T |
|
| Q |
215 |
ttgttcaagtcatgaactcggaattatcagtgaagacaaaagaataat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
41987213 |
ttgttcaagtcatgaactcggaattatcaatgaagataaaagaataat |
41987260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University