View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20585_low_18 (Length: 250)

Name: NF20585_low_18
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20585_low_18
NF20585_low_18
[»] chr1 (1 HSPs)
chr1 (1-239)||(31231089-31231327)
[»] chr4 (3 HSPs)
chr4 (151-216)||(56329216-56329281)
chr4 (137-216)||(41496070-41496149)
chr4 (143-239)||(24899343-24899440)
[»] chr7 (1 HSPs)
chr7 (172-241)||(37486065-37486137)
[»] chr6 (2 HSPs)
chr6 (143-229)||(33293560-33293648)
chr6 (139-215)||(1825897-1825973)
[»] chr5 (1 HSPs)
chr5 (143-230)||(41364665-41364753)
[»] chr3 (1 HSPs)
chr3 (139-239)||(5411433-5411537)
[»] chr2 (1 HSPs)
chr2 (168-236)||(45134692-45134761)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31231327 - 31231089
Alignment:
Q  1 cgtgtactttgaggcttaaacttattgatttgtgaacatggagtatttggatgcatatttgaccattgtttatcacatctctatagttttcaattttgga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31231327 cgtgtactttgaggcttaaactttttgatttgtgaacatggagtatttggatgcatatttgaccattgtttatcacatctctatatttttcaattttgga 31231228  T
Q  101 ttcgaaaaaatgtgtgaatgattcatgctttctagaatatcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatct 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31231227 ttcgaaaaaatgtgtgaatgagtcatgctttctagaatatcctttgtgacaagtcattggaatgccaatgctataaataaatgattggtgattgtaatct 31231128  T
Q  201 ttatcaaatgaatgaagaagaaattagtttgctagaata 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31231127 ttatcaaatgaatgaagaagaaattagtttgctagaata 31231089  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 56329216 - 56329281
Alignment:
Q  151 gagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa 216  Q
    |||||||||||||| ||||||||||||||| || ||||| ||| ||||| ||||||||||||||||    
T  56329216 gagtcattggaatgtcaatgctataaataattggttggtcattataatcattatcaaatgaatgaa 56329281  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 41496070 - 41496149
Alignment:
Q  137 atatcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa 216  Q
    ||||| ||||||| |||||||| ||||| ||||||||||||||   | ||||| ||||||||| ||||||||||||||||    
T  41496070 atatcatttgtgatgagtcattagaatgtcaatgctataaatagtgggttggtcattgtaatccttatcaaatgaatgaa 41496149  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 24899343 - 24899440
Alignment:
Q  143 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtttgctagaata 239  Q
    ||||||||||||||||| |||| |||| ||||||||||  ||||||| ||||||||| | ||| |||| |||||| ||||||| ||||||| |||||||    
T  24899343 tttgtgacgagtcattgaaatgtcaatactataaataatggattggtcattgtaatcataatcaaaataaatgaatgaagaaa-tagtttgttagaata 24899440  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 37486137 - 37486065
Alignment:
Q  172 tataaataaatgattggtgattgtaatctttatcaaatg-aatgaa-gaag-aaattagtttgctagaataat 241  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||| |||||||||    
T  37486137 tataaataaatgattggtgattgtaatcattatcaaatgaaatgaatgaagaaaattagtttgttagaataat 37486065  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 33293560 - 33293648
Alignment:
Q  143 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtt 229  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||| | ||||||||| ||||| ||||||||||| |||||| ||||||    
T  33293560 tttgtgatgagtcattggaatgccaatgctataaataatgggttgatcattgtaatcattatcgaaatgaatgaatgaagaatttagtt 33293648  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 1825897 - 1825973
Alignment:
Q  139 atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatga 215  Q
    ||||||||||| ||||||||| |||| |||||||||||||||  | || || ||||||||| || | ||||||||||    
T  1825897 atcctttgtgatgagtcattgaaatgtcaatgctataaataatggttttgtcattgtaatcattgtgaaatgaatga 1825973  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 41364665 - 41364753
Alignment:
Q  143 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagttt 230  Q
    ||||||| || ||||| ||||  ||| |||||||| || |||||| ||||||||||| |||| ||||||||||| |||||| |||||||    
T  41364665 tttgtgatgaatcattagaatatcaaggctataaagaagtgattgatgattgtaatcattatgaaatgaatgaatgaagaatttagttt 41364753  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 5411433 - 5411537
Alignment:
Q  139 atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatca----aatgaatgaagaagaaattagtttgcta 234  Q
    ||||||| ||| ||||||||| |||||||||| |||||||||   | || | ||||||| | ||||||    |||||||||||||||| |||||||| ||    
T  5411433 atcctttatgatgagtcattgtaatgccaatgatataaataatgtagtgctcattgtaaacattatcaaatgaatgaatgaagaagaatttagtttgtta 5411532  T
Q  235 gaata 239  Q
    |||||    
T  5411533 gaata 5411537  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 45134761 - 45134692
Alignment:
Q  168 atgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagtttgctaga 236  Q
    |||||||||||||  | ||||| |||||||||  ||||||||||||||| ||| ||||||||||| ||||    
T  45134761 atgctataaataataggttggttattgtaatcaatatcaaatgaatgaatgaataaattagtttgttaga 45134692  T

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