View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20585_low_2 (Length: 530)
Name: NF20585_low_2
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 7058460 - 7058749
Alignment:
| Q |
16 |
atgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaagtgtct |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
7058460 |
atgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacactcaatttggtgaaaacatttaagtgtct |
7058559 |
T |
|
| Q |
116 |
ttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttc |
215 |
Q |
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||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7058560 |
ttgatgaaattgtgtaatttccttatatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagctatgttttc |
7058659 |
T |
|
| Q |
216 |
ctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagaggtacatttgtcaatgatt |
305 |
Q |
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| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
7058660 |
ccatgttcactaggtggatatctaatttgcctttgtaaatcagaagcctaagatggcataaatatatgatatgttcatttgtcaatgatt |
7058749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 7049539 - 7049834
Alignment:
| Q |
16 |
atgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaag |
110 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||||| ||||| ||||||| | ||||| ||||||||| ||||| |
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| T |
7049539 |
atgacatatgcaactgtgaaggtaagaaattattaattaaatcacaagtactcttttgttcttttaagtaaaaacacttaatttcgtgaaaacatttaag |
7049638 |
T |
|
| Q |
111 |
tgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaa-ttttgcagggttcaggacatatagctcctgagtacactcctgagttat |
209 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7049639 |
tgtctctgatgagattgtgcaatttccttacatcaattttcatgtaattaaattttgcagggttcaggacatatagctcctgagtacactcctgagctat |
7049738 |
T |
|
| Q |
210 |
gttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagaggtacatttgtcaatgatt |
305 |
Q |
| |
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||||||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
7049739 |
gttttcccatgttctctaggtggatatctaatttgcctttgtaaatcataagcctaagatggcataaatatatgagatgttcatttgtcaatgatt |
7049834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 7042386 - 7042681
Alignment:
| Q |
16 |
atgacatatgcaactgtgaaggtaagagattattaataaca-----agtgatattttgttctattaagaaaaa-acaatcaatttggtgaaaacaattaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||| | | |||| | |||||||| |||| ||||| ||| |||||||||||| || | || |
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| T |
7042386 |
atgacatttgcaactgtgaaggtaagaaattagtaattaaatcataagtgctcttttgttcatttaataaaaacacactcaatttggtgagaatatgcaa |
7042485 |
T |
|
| Q |
110 |
gtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttat |
209 |
Q |
| |
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||||||||||||||||||| ||| || ||| ||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |
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| T |
7042486 |
gtgtctttgatgagattgtacaacatctttagatcgattttcgtgtaattaattttgcagggttcgggacatacagctcctgagtacactcctgagcaat |
7042585 |
T |
|
| Q |
210 |
gttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagaggtacatttgtcaatgatt |
305 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||| || | ||||||| |||||||||||||| || |||||| ||||||| |
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| T |
7042586 |
gttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaatctcaagatggaataaatatatgagatgttcatttgcaaatgatt |
7042681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 7007965 - 7008111
Alignment:
| Q |
108 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
7007965 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttctggacatatagctccttagtacactcctgagca |
7008064 |
T |
|
| Q |
208 |
atgttttcctatgttcactagatggatatctaatttgcctttgtaaa |
254 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| |||||||| |
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|
| T |
7008065 |
atgttttcccatgttccttaggtggatatctaatttgcgtttgtaaa |
7008111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 338 - 513
Target Start/End: Original strand, 7058782 - 7058955
Alignment:
| Q |
338 |
taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttggcttagnnnnnnnntgaagattctgcatactttgcgctctaaca |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||| |||||||||| |
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|
| T |
7058782 |
taatgtcaaggtttcatgtttcagttgtttcctgattctatctgcttcacatcttggca-agaaaata--tgaagattctgcttactttacgctctaaca |
7058878 |
T |
|
| Q |
438 |
taggttcttaagtttccaccgcgtttagcaatggataatcttcattgaaaaacttgt-ggactcataaggtggattt |
513 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
7058879 |
taggttcttaagtttccaccacgtttagcaatggataatcttcattgaaaaacttgtgggacatataaggtggattt |
7058955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 7006155 - 7006265
Alignment:
| Q |
144 |
caattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaattt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
7006155 |
caattttcatgtaattaattttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaattt |
7006254 |
T |
|
| Q |
244 |
gcctttgtaaa |
254 |
Q |
| |
|
||||||||||| |
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|
| T |
7006255 |
gcctttgtaaa |
7006265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 154 - 280
Target Start/End: Original strand, 7022817 - 7022942
Alignment:
| Q |
154 |
gtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |
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|
| T |
7022817 |
gtaattaattttgcagggttcaggacatacagctcctgcggatgctcctgaacaatgttttgccatgttcactaggtggatatctaatttgcctttgtaa |
7022916 |
T |
|
| Q |
254 |
atcaaaagcctaagatggcataaatat |
280 |
Q |
| |
|
|||||||| || | ||||||||||||| |
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| T |
7022917 |
atcaaaag-ctgatatggcataaatat |
7022942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 6997402 - 6997495
Alignment:
| Q |
164 |
ttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatca |
257 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
6997402 |
ttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca |
6997495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 7015916 - 7016030
Alignment:
| Q |
155 |
taattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||| || |
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|
| T |
7015916 |
taattaattttgcagggttcaggacatacagctcctgagtacactcctgatcaatgttttggcatgttcactaggtggatatctaatttacctttgt-aa |
7016014 |
T |
|
| Q |
255 |
tcaaaagcctaagatg |
270 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
7016015 |
tcagaagcataagatg |
7016030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 7029531 - 7029671
Alignment:
| Q |
113 |
tctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctg-agtacactcctgagttatgt |
211 |
Q |
| |
|
||||||||| || ||||| | || ||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |
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|
| T |
7029531 |
tctttgatgtgactgtgctaatttgttatatcaatttttgggtaattaattttgcagggttcaggacatacagctcctgcagt-cactcctgagcaatgt |
7029629 |
T |
|
| Q |
212 |
tttcctatgttcactagatggatatctaatttgcctttgtaa |
253 |
Q |
| |
|
|| | |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
7029630 |
ttagccatgttcaccaggtggacatctaatttgcctttgtaa |
7029671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 7049867 - 7049923
Alignment:
| Q |
338 |
taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttgg |
394 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7049867 |
taatgtcaaggtttcatgtttaagttgtttcctgattccatcttcttcacatcttgg |
7049923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 7007154 - 7007247
Alignment:
| Q |
16 |
atgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaaca |
104 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| | |||||| | ||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
7007154 |
atgacatttgcaactgtgaaggtaagaaattattaattaaatcacaagtgctcttttgttcttttaagaaaaaacagtcaatttggtgaaaaca |
7007247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 7042714 - 7042771
Alignment:
| Q |
338 |
taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttggct |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || ||| ||||||||||||| |
|
|
| T |
7042714 |
taatgtcaaggttgcatgtttcagttgttttctgattc-atgttcatcacatcttggct |
7042771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 7006282 - 7006334
Alignment:
| Q |
341 |
tgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttg |
393 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
7006282 |
tgtcaaggtttcatgtttcagttttttcgtgatttcgtcttcttcacatcttg |
7006334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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