View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_low_26 (Length: 213)
Name: NF20585_low_26
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 37926130 - 37925945
Alignment:
| Q |
14 |
gcagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaac |
113 |
Q |
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| T |
37926130 |
gcagagacattgacattggtgctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaac |
37926031 |
T |
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| Q |
114 |
ttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctg |
199 |
Q |
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| T |
37926030 |
ttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctg |
37925945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 37922546 - 37922363
Alignment:
| Q |
15 |
cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact |
114 |
Q |
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| T |
37922546 |
cagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaact |
37922447 |
T |
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| Q |
115 |
taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacct |
198 |
Q |
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| T |
37922446 |
caacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttacct |
37922363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 37937820 - 37937637
Alignment:
| Q |
15 |
cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact |
114 |
Q |
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|||||||| | |||||||||||||||||||||||| |||||||| | |||| ||||| |||||| | || |||||||||||||| || ||||||| || |
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| T |
37937820 |
cagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctct |
37937721 |
T |
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| Q |
115 |
taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacct |
198 |
Q |
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||||||| | || || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
37937720 |
taacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacct |
37937637 |
T |
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