View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_low_3 (Length: 473)
Name: NF20585_low_3
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 47108560 - 47108835
Alignment:
| Q |
20 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47108560 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacaaatgcaaacattccaaacacaatattataaaaggatt |
47108659 |
T |
|
| Q |
120 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47108660 |
attttgctttgtaacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
47108758 |
T |
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| Q |
220 |
ggatccgccttgag---ttctttaaatttgtgtgtaactatggaagaaaagtccaggaacttgacacggcctgtttg |
293 |
Q |
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|||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
47108759 |
ggatccgccttgagttcttctttagatttgtgtgtcactatggaagaaaagtccaggaacttgacacggcttgtttg |
47108835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 47109637 - 47109721
Alignment:
| Q |
294 |
aatcatgaattcaaagacaaaa-ggatttagaattcgtacctctctcgccgttagcgctcatcttcgtcgtcgatatcatcagag |
377 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
47109637 |
aatcatgaattcaaagacaaaaaggatttagaaatcttacctctcttgccgttagcgtgcttcttcgtcgtcgatatcatcagag |
47109721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 48935779 - 48936050
Alignment:
| Q |
21 |
aacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatta |
120 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
48935779 |
aacaatatatttatttcaaatcaagcatgaattttcatgttgataggaacaattaggaaacaaatgaaaacattccaaacacaatattataaaaggatta |
48935878 |
T |
|
| Q |
121 |
ttttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatcag |
220 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48935879 |
ttttgctttgtaacttacaccgtagagtgcagtatttgttataggattcatc-tttgaaagaaggtcctagagtgagattgtaacactcatcagaatcag |
48935977 |
T |
|
| Q |
221 |
gatccgccttgagttctttaaatttgtgtgtaactatggaagaaaagtccaggaacttgacacggcctgtttg |
293 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48935978 |
gatccgccttgagttctttagatttgtgtgtcactatggaagagaagtccaggaacttgacacggcctgtttg |
48936050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 36969871 - 36969611
Alignment:
| Q |
20 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
119 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36969871 |
caacaatatatttatgtccaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
36969772 |
T |
|
| Q |
120 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
36969771 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggttctagagtgagattgtaacactt---------- |
36969683 |
T |
|
| Q |
220 |
ggatccgccttgagttctttaaatttgtgtgtaactatggaagaaaagtccaggaacttgacacggcctgtttg |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
36969682 |
--atccgccttgagttctttaaatttgtgtgtaactattgaagaaaagtctaggaacttgacacggcctgtttg |
36969611 |
T |
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