View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_low_4 (Length: 429)
Name: NF20585_low_4
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 12887549 - 12887814
Alignment:
| Q |
9 |
gattattcttgtgtgtatggttcatctattcaatctttttctttctcttccttcttagccatttttcacatgggaaaagtttatgatttcgaagaagagg |
108 |
Q |
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| T |
12887549 |
gattattcttttgtgtatggttcatctattcaatctttttctttctcttccctattagctatttttcacatgggcagagtttatgatttcgaataagagg |
12887648 |
T |
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| Q |
109 |
aattatgctgagaaacaaagataaagtgttattggcttatattctacctaaaatggaaaacatagagattctttcaacttattaaagttgtattttgtgt |
208 |
Q |
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| T |
12887649 |
atgtatgcagagaaacaaagataaagtcttattggctaatattctacctaaaatggaaaacatagagattctttcaacttattaaagttgtcttttgtgt |
12887748 |
T |
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| Q |
209 |
tggaacttcttcttttcttaattgttcaattacttct--tcttttttataacaataaggttcaatt |
272 |
Q |
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| T |
12887749 |
tggaacttcttcttttcttaatcgttcaattatttcttgttttttttataacaataaggtttaatt |
12887814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 261 - 412
Target Start/End: Original strand, 12889279 - 12889430
Alignment:
| Q |
261 |
taaggttcaattattgtataattgttgaaaactattgtccacaaaatctataaatcatgattgtcaccgcgagttatttatatactacgctcttcttacg |
360 |
Q |
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| T |
12889279 |
taaggttcaattattgaataattgttaaaaaatattgtccataaaatctataaatgatgattttcaccgcaagttatttatgtactacggtcttcttacg |
12889378 |
T |
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| Q |
361 |
tataagtcatatatgcgttcaggttatcttgtaacatatatacggggaaggt |
412 |
Q |
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| T |
12889379 |
tgcaagtcatacatgtgttcaggttatctcttcacatgtatacagggaaggt |
12889430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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