View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20585_low_7 (Length: 378)

Name: NF20585_low_7
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20585_low_7
NF20585_low_7
[»] chr1 (3 HSPs)
chr1 (36-151)||(28765233-28765345)
chr1 (245-364)||(28765439-28765558)
chr1 (313-358)||(2570974-2571019)
[»] chr7 (3 HSPs)
chr7 (315-366)||(43189875-43189926)
chr7 (298-354)||(24463231-24463287)
chr7 (313-353)||(39118318-39118358)
[»] chr8 (3 HSPs)
chr8 (321-358)||(17106248-17106285)
chr8 (298-342)||(31219163-31219207)
chr8 (322-358)||(36470683-36470719)
[»] chr5 (1 HSPs)
chr5 (313-358)||(1863186-1863231)
[»] chr4 (1 HSPs)
chr4 (326-359)||(24971036-24971069)
[»] chr2 (2 HSPs)
chr2 (52-109)||(28854732-28854788)
chr2 (297-353)||(752119-752175)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 28765233 - 28765345
Alignment:
Q  36 ctattatcacaacaactaaatagacacatataagaagtaggtcatgcatttcactcaaaggcttcattaaactaagggtgatctaagacttaaacattgc 135  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28765233 ctattatcacaacaactaaatagacacatataag---taggtcatgcatttcactcaaaggcttcattaaactaagggtgatctaagacttaaacattgc 28765329  T
Q  136 tcgtcctcaaacgata 151  Q
    ||||||||||||||||    
T  28765330 tcgtcctcaaacgata 28765345  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 28765439 - 28765558
Alignment:
Q  245 ctgtccgggacaccacacaatctattccaatacgtagcatatattaatatgcgtcttgctaacaggtacccttagagcactagttaaggattaaaaaata 344  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  28765439 ctgtctgggacaccacaaaatctattccgatacgtagcatatattaatatgcgtcttgtaaacagatacccttagagcactagttaaggattaaaaaata 28765538  T
Q  345 gaagtaatttacaaagttta 364  Q
    ||||||||||||||| ||||    
T  28765539 gaagtaatttacaaatttta 28765558  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 2570974 - 2571019
Alignment:
Q  313 cccttagagcactagttaaggattaaaaaatagaagtaatttacaa 358  Q
    ||||||| |||||||||||||||| ||| |||||| ||||||||||    
T  2570974 cccttagggcactagttaaggattcaaatatagaaataatttacaa 2571019  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 43189926 - 43189875
Alignment:
Q  315 cttagagcactagttaaggattaaaaaatagaagtaatttacaaagtttatg 366  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||| ||||||    
T  43189926 cttagggcactagttaacgattcaaaaatagaagtaatttataaattttatg 43189875  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 24463231 - 24463287
Alignment:
Q  298 tcttgctaacaggtacccttagagcactagttaaggattaaaaaatagaagtaattt 354  Q
    |||||||||||||| ||||||||| ||| | ||| |||| |||||||||| ||||||    
T  24463231 tcttgctaacaggtgcccttagagtacttggtaaagattcaaaaatagaaataattt 24463287  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 39118358 - 39118318
Alignment:
Q  313 cccttagagcactagttaaggattaaaaaatagaagtaatt 353  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  39118358 cccttagagcattagttaaagattaaaaaatagaaataatt 39118318  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 17106285 - 17106248
Alignment:
Q  321 gcactagttaaggattaaaaaatagaagtaatttacaa 358  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  17106285 gcactagttaaggattcaaatatagaagtaatttacaa 17106248  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 31219163 - 31219207
Alignment:
Q  298 tcttgctaacaggtacccttagagcactagttaaggattaaaaaa 342  Q
    ||||| ||||| || ||||||||||||||||||||||||| ||||    
T  31219163 tcttgttaacaagtgcccttagagcactagttaaggattataaaa 31219207  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 36470683 - 36470719
Alignment:
Q  322 cactagttaaggattaaaaaatagaagtaatttacaa 358  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  36470683 cactagttaaggattcaaatatagaagtaatttacaa 36470719  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 1863231 - 1863186
Alignment:
Q  313 cccttagagcactagttaaggattaaaaaatagaagtaatttacaa 358  Q
    ||||||| |||||||||||||||| ||| |||||| ||||||||||    
T  1863231 cccttagggcactagttaaggattcaaatatagaaataatttacaa 1863186  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 24971069 - 24971036
Alignment:
Q  326 agttaaggattaaaaaatagaagtaatttacaaa 359  Q
    ||||||||||| ||||||||||||||||||||||    
T  24971069 agttaaggattcaaaaatagaagtaatttacaaa 24971036  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 28854788 - 28854732
Alignment:
Q  52 taaatagacacatataagaagtaggtcatgcatttcactcaaaggcttcattaaacta 109  Q
    |||||| ||||| | |||||| ||| |||||||| |||||||||||||||||||||||    
T  28854788 taaataaacacaaacaagaaggaggccatgcatt-cactcaaaggcttcattaaacta 28854732  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 752119 - 752175
Alignment:
Q  297 gtcttgctaacaggtacccttagagcactagttaaggattaaaaaatagaagtaatt 353  Q
    |||||||||||| |||||||||| ||||| |||||| |||  ||||||||| |||||    
T  752119 gtcttgctaacaagtacccttagggcacttgttaagaattctaaaatagaaataatt 752175  T

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