View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_low_9 (Length: 344)
Name: NF20585_low_9
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 39684249 - 39683930
Alignment:
| Q |
10 |
acatcatcatatgggtcaccccactcaccctagattatttctttacatgattnnnnnnnnnnnnnnnnnctacttactaagcactcgtttggtttcacgt |
109 |
Q |
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| T |
39684249 |
acatcatcatatgggtcaccccactcaccctagattatttctttacatgattaaaaacaaaaaataaaactacttactaagcactcgtttggtttcacgt |
39684150 |
T |
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| Q |
110 |
tagaaaccatcaaacgtgagttcaaattgccaaactcaagtttaccattaaacctatatgtttggctattcatgttttgtcgtgattttgattttagatt |
209 |
Q |
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| T |
39684149 |
tagaaaccatcaaacgtgagttcaaattgccaaactcaagtttaccatgaaatttatatgtttgactattcatgttttgttgtgattttgattttagatt |
39684050 |
T |
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| Q |
210 |
tgcgtctg-ctgaagctctggtgaaagtagcttctgagaattgcgtttccattttattgatactgctgaattattttattattttctttgacaatcattt |
308 |
Q |
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| T |
39684049 |
tgcgtctgtctgaagctttggtggaagtaacttccgagaattgcgtttccattttattgatactgctgaattattttattattttctttgagaatcattc |
39683950 |
T |
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| Q |
309 |
cattaaatttcagaacaatg |
328 |
Q |
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| T |
39683949 |
cattaaatttcagaacaatg |
39683930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 165 - 328
Target Start/End: Original strand, 1372000 - 1372164
Alignment:
| Q |
165 |
atatgtttggctattcatgttttgtcgtgattttgattttagatttgcgtctg-ctgaagctctggtgaaagtagcttctgagaattgcgtttccatttt |
263 |
Q |
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| T |
1372000 |
atatgtttggctattcatgttttatagtgattttgattttaaacttgcgtctatctgaagcgctggtaggagtagcttctgagaattgtgtttccatttt |
1372099 |
T |
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| Q |
264 |
attgatactgctgaattattttattattttctttgacaatcatttcattaaatttcagaacaatg |
328 |
Q |
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| T |
1372100 |
attgatactgctggattattttattattttctttgagaatcattccattaaatttcacaacaatg |
1372164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 328
Target Start/End: Complemental strand, 31767366 - 31767129
Alignment:
| Q |
90 |
gcactcgtttggtttcacgttagaaaccatcaaacgtgagttcaaattgccaaactcaagtttaccattaaacctatatgtttggctattcatgttttgt |
189 |
Q |
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| T |
31767366 |
gcactcgtttggtttcacgttagaaaccatcaaacgtgagttcaaattgccaaactcaagtttatcattaaattcatatgtttggctatttatgttttat |
31767267 |
T |
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| Q |
190 |
cgtgattttgattttagatttgcgtct-gctgaagctctggtgaaagtagcttctgagaattgcgtttccattttattgatactgctgaattattttatt |
288 |
Q |
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| T |
31767266 |
cgtgattttgattttaaacttgcgtctatctgaag--ctggtgggagtagcttctgagaattgcatttccattttattgatactgctggattattttatt |
31767169 |
T |
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| Q |
289 |
attttctttgacaatcatttcattaaatttcagaacaatg |
328 |
Q |
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| T |
31767168 |
attttctttgagaatcattccattaaatttcacaacaatg |
31767129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 52812533 - 52812614
Alignment:
| Q |
96 |
gtttggtttcacgttagaaaccatcaaacgtgagttcaaattgccaaactcaagtttaccattaaacctatatgtttggcta |
177 |
Q |
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| T |
52812533 |
gtttggtttgacgtttgaaatcatcaaacgtgagtttaaggggctaaactcaattttacaaccaaacctacatgtttggcta |
52812614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 89 - 320
Target Start/End: Complemental strand, 38741515 - 38741285
Alignment:
| Q |
89 |
agcactcgtttggtttcacgttagaaaccatcaaacgtgagttcaaattgccaaactcaagtttaccattaaacctatatgtttggctattcatgttttg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
38741515 |
agcactcgtttggtttcacgttagaaaccatcaaacgtgagttcaaattgtcaaactcaagtttatcattaaattcatatgtttggctattcatgtttta |
38741416 |
T |
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| Q |
189 |
tcgtgattttgattttagatttgcgtct-gctgaagctctggtgaaagtagcttctgagaattgcgtttccattttattgatactgctgaattattttat |
287 |
Q |
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| T |
38741415 |
tcgtgattttgattttaaacttgcgtctatctgaag--ttggtgggagtagcttctgagaattgcgtttccattttattgatactgctggattattttat |
38741318 |
T |
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| Q |
288 |
tattttctttgacaatcatttcattaaatttca |
320 |
Q |
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| T |
38741317 |
tattttctttgagaatcattccattaaatttca |
38741285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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