View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20586_high_2 (Length: 404)

Name: NF20586_high_2
Description: NF20586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20586_high_2
NF20586_high_2
[»] chr7 (9 HSPs)
chr7 (1-232)||(10975357-10975588)
chr7 (295-404)||(10975651-10975760)
chr7 (297-383)||(2624732-2624819)
chr7 (297-345)||(32199961-32200009)
chr7 (297-379)||(20054985-20055068)
chr7 (297-346)||(31307978-31308027)
chr7 (297-346)||(31750847-31750896)
chr7 (297-345)||(31863910-31863958)
chr7 (368-404)||(42957488-42957524)
[»] chr6 (10 HSPs)
chr6 (1-105)||(8169389-8169493)
chr6 (295-346)||(1227802-1227853)
chr6 (297-346)||(5460032-5460081)
chr6 (297-346)||(34414469-34414518)
chr6 (295-346)||(16659661-16659712)
chr6 (295-346)||(21544256-21544307)
chr6 (325-378)||(32603619-32603673)
chr6 (297-346)||(22362746-22362795)
chr6 (297-346)||(34077544-34077593)
chr6 (368-404)||(25167053-25167089)
[»] chr5 (9 HSPs)
chr5 (298-404)||(15885515-15885621)
chr5 (297-378)||(31312619-31312701)
chr5 (297-346)||(4561802-4561851)
chr5 (295-346)||(23188764-23188815)
chr5 (296-346)||(6896983-6897033)
chr5 (297-346)||(6117713-6117762)
chr5 (297-346)||(38874536-38874585)
chr5 (297-345)||(8855525-8855573)
chr5 (368-404)||(13153663-13153699)
[»] chr3 (1 HSPs)
chr3 (297-345)||(2985697-2985745)
[»] chr8 (9 HSPs)
chr8 (295-346)||(11830301-11830352)
chr8 (361-404)||(24375817-24375860)
chr8 (297-346)||(2873576-2873625)
chr8 (295-343)||(25653905-25653953)
chr8 (295-346)||(12478699-12478750)
chr8 (295-346)||(35990745-35990796)
chr8 (298-391)||(12719226-12719320)
chr8 (297-346)||(38703796-38703845)
chr8 (297-346)||(41509580-41509629)
[»] chr4 (6 HSPs)
chr4 (295-346)||(49166771-49166822)
chr4 (297-345)||(25244559-25244607)
chr4 (295-346)||(39133210-39133261)
chr4 (297-382)||(49296163-49296249)
chr4 (297-346)||(42056106-42056155)
chr4 (297-376)||(4102916-4102996)
[»] chr2 (5 HSPs)
chr2 (295-346)||(15543912-15543963)
chr2 (361-404)||(23381351-23381394)
chr2 (297-346)||(29949683-29949732)
chr2 (296-346)||(16260636-16260686)
chr2 (360-404)||(29878849-29878893)
[»] scaffold0002 (1 HSPs)
scaffold0002 (297-346)||(332191-332240)
[»] scaffold0022 (1 HSPs)
scaffold0022 (295-346)||(63230-63281)
[»] chr1 (4 HSPs)
chr1 (297-346)||(21770882-21770931)
chr1 (297-346)||(22152045-22152094)
chr1 (297-346)||(44961133-44961182)
chr1 (325-378)||(44961193-44961246)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10975357 - 10975588
Alignment:
Q  1 gatattgcaattgttaaagactcttgacagcaagttgtcaacactactggatctacaattctttttctaccatcatgactatcaaacgatgcctgcggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975357 gatattgcaattgttaaagactcttgacagcaagttgtcaacactactggatctacaattctttttctaccatcatgactatcaaacgatgcctgcggtt 10975456  T
Q  101 cacaaatccattggttatatataagtgtatctttggttaaatgtttcatgtatagttaatcaactacacttaggatgagtagttgaattagtttgatggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10975457 cacaaatccattggttatatataagtgtatctttggttaaatgtttcatgtatagttaatcaactactcttaggatgagtagttgaattagtttgatggg 10975556  T
Q  201 ttaacagtgttttaccgtctaaagaataggtc 232  Q
    ||||||||||||||||| ||| ||||||||||    
T  10975557 ttaacagtgttttaccgcctatagaataggtc 10975588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 10975651 - 10975760
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattacaagggacgaaagtacca 394  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||    
T  10975651 cagtacaaaatcgatgatatgatagggggtaaaccgaaatttgctcaaattacaggggctaaacataaatttactcaaattacaagggacgaaagtacca 10975750  T
Q  395 tagattttgt 404  Q
    ||||||||||    
T  10975751 tagattttgt 10975760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 2624819 - 2624732
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt-agagggaatgaacataaatttactcaaattacaaggga 383  Q
    |||||||||||| ||||||| |||||| |||| |||||||||||||||| | ||||  | |||  |||||| ||||||||||||||||    
T  2624819 gtacaaaatcgaagatatgacagaggataaactgaaatttgctcaaattaacagggggtaaaccaaaatttgctcaaattacaaggga 2624732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 32200009 - 32199961
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 345  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||||||||    
T  32200009 gtacaaaatcgatgatatggtagggggtaaaccgaaatttgctcaaatt 32199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 20055068 - 20054985
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta-gagggaatgaacataaatttactcaaattacaa 379  Q
    ||||||||| || ||||||| |||||  ||||||||||||||||||||||  ||||  | ||| ||||||| ||||||||||||    
T  20055068 gtacaaaattgaagatatgacagagggtaaaccgaaatttgctcaaattacaagggggtaaacctaaatttgctcaaattacaa 20054985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 31307978 - 31308027
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||  || || |||||||||||||||||||||||    
T  31307978 gtacaaaatcgaagatatggcagggggcaaaccgaaatttgctcaaatta 31308027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 31750847 - 31750896
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  31750847 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 31750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 31863958 - 31863910
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 345  Q
    |||||||||||||||||||| |  ||  |||||||||||||||||||||    
T  31863958 gtacaaaatcgatgatatgacaaggggtaaaccgaaatttgctcaaatt 31863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 42957524 - 42957488
Alignment:
Q  368 ctcaaattacaagggacgaaagtaccatagattttgt 404  Q
    |||||||||||||||||||||||||| || |||||||    
T  42957524 ctcaaattacaagggacgaaagtaccttaaattttgt 42957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8169493 - 8169389
Alignment:
Q  1 gatattgcaattgttaaagactcttgacagcaagttgtcaacactactggatctacaattctttttctaccatcatgactatcaaacgatgcctgcggtt 100  Q
    ||||||||||||| ||| || |||||| |||||||||||||||||| |||||| |||||  || |||| ||||| |||||  |||| |||||||  ||||    
T  8169493 gatattgcaattgataatgattcttgagagcaagttgtcaacactattggatccacaatctttcttcttccatcttgacttccaaatgatgcctatggtt 8169394  T
Q  101 cacaa 105  Q
    |||||    
T  8169393 cacaa 8169389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 1227802 - 1227853
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  1227802 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 1227853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 5460081 - 5460032
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  5460081 gtacaaaatcgatgttatggtaggggataaaccgaaatttgctcaaatta 5460032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 34414518 - 34414469
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||| |||||| ||| ||||||||||||||||||    
T  34414518 gtacaaaatcgaagatatgacagaggataaatcgaaatttgctcaaatta 34414469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 16659712 - 16659661
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  16659712 cagtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 16659661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 21544256 - 21544307
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  21544256 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 21544307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 32603673 - 32603619
Alignment:
Q  325 aaaccgaaatttgctcaaattag-agggaatgaacataaatttactcaaattaca 378  Q
    ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||    
T  32603673 aaaccgaaatttgctcaaattagaagggggtaaacctaaatttactcaaattaca 32603619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 22362746 - 22362795
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||||||  ||  ||||||||||||||||||||||    
T  22362746 gtacaaaatcgaagatatgataagggttaaaccgaaatttgctcaaatta 22362795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 34077593 - 34077544
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  34077593 gtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 34077544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 25167053 - 25167089
Alignment:
Q  368 ctcaaattacaagggacgaaagtaccatagattttgt 404  Q
    |||||||||||||||||||||||||| || |||||||    
T  25167053 ctcaaattacaagggacgaaagtaccttaaattttgt 25167089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 15885621 - 15885515
Alignment:
Q  298 tacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattacaagggacgaaagtaccatag 397  Q
    ||||||||| ||||||||  || ||  |||||||||||||||||||||| ||||  | ||   ||||||||||||||||||||||   |||||||||||     
T  15885621 tacaaaatcaatgatatggcagggggtaaaccgaaatttgctcaaattacagggggtaaaacaaaatttactcaaattacaaggggaaaaagtaccataa 15885522  T
Q  398 attttgt 404  Q
    |||||||    
T  15885521 attttgt 15885515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 31312701 - 31312619
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta-gagggaatgaacataaatttactcaaattaca 378  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||  |||| || ||| ||||||| |||||||||||    
T  31312701 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaattacaaggggataaacctaaatttgctcaaattaca 31312619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 4561851 - 4561802
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  4561851 gtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 4561802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 23188815 - 23188764
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  23188815 cagtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 23188764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 6897033 - 6896983
Alignment:
Q  296 agtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    ||||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  6897033 agtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 6896983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 6117713 - 6117762
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||  |||||| |||| |||||||||||||||||    
T  6117713 gtacaaaatcgaagatatggcagaggataaacggaaatttgctcaaatta 6117762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 38874585 - 38874536
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||||||| ||  ||||||||||||||| ||||||    
T  38874585 gtacaaaatcgaagatatgatagggggtaaaccgaaatttgctaaaatta 38874536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 8855525 - 8855573
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 345  Q
    ||||||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  8855525 gtacaaaatcgatgatatggtaggggagtaactgaaatttgctcaaatt 8855573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 13153699 - 13153663
Alignment:
Q  368 ctcaaattacaagggacgaaagtaccatagattttgt 404  Q
    |||||||||||||||||||||||||| || |||||||    
T  13153699 ctcaaattacaagggacgaaagtaccgtaaattttgt 13153663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 2985745 - 2985697
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 345  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  2985745 gtacaaaatcgatgatatggcagaggataaaccgaaatttgctcaaatt 2985697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 11830301 - 11830352
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  11830301 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 11830352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 24375860 - 24375817
Alignment:
Q  361 aaatttactcaaattacaagggacgaaagtaccatagattttgt 404  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  24375860 aaatttgctcaaattacaagggacgaaagtaccataaattttgt 24375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 2873576 - 2873625
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  2873576 gtacaaaatcgaagatatgacaggggataaaccgaaatttgctcaaatta 2873625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 25653953 - 25653905
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaa 343  Q
    |||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  25653953 cagtacaaaatcgaagatatggtagagggtaaaccgaaatttgctcaaa 25653905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 12478699 - 12478750
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  12478699 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 12478750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 35990796 - 35990745
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    ||||||||||||||  ||||||||| ||  ||||||||||||||||||||||    
T  35990796 cagtacaaaatcgaaaatatgatagggggtaaaccgaaatttgctcaaatta 35990745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 391
Target Start/End: Complemental strand, 12719320 - 12719226
Alignment:
Q  298 tacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattaga-gggaatgaacataaatttactcaaattacaagggacgaaagta 391  Q
    ||||||||||||||||||  ||  |  |||||||||||||||||||||||| |||  | |||  |||| | ||||||||||||||| ||||||||    
T  12719320 tacaaaatcgatgatatggcaggaggtaaaccgaaatttgctcaaattagaggggggtaaactaaaatctgctcaaattacaaggggcgaaagta 12719226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 38703845 - 38703796
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  38703845 gtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 38703796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 41509629 - 41509580
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  41509629 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 41509580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 49166771 - 49166822
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  49166771 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 49166822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 25244607 - 25244559
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 345  Q
    ||||||||||||||||||||||| ||  ||||||||| |||||||||||    
T  25244607 gtacaaaatcgatgatatgatagggggtaaaccgaaaattgctcaaatt 25244559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 39133210 - 39133261
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| ||||||  || ||||||| ||||||||||||||||||    
T  39133210 cagtacaaaatcgaagatatggcaggggacaaatcgaaatttgctcaaatta 39133261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 49296249 - 49296163
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt-agagggaatgaacataaatttactcaaattacaaggg 382  Q
    |||||||||||| ||||||  || || |||||||||||||||||||||| | ||||  | |||  |||||| |||||||||||||||    
T  49296249 gtacaaaatcgaagatatggcagggggcaaaccgaaatttgctcaaattaacagggggtaaactgaaattttctcaaattacaaggg 49296163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 42056106 - 42056155
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||||||||  || ||  ||||||||||||||||||||||    
T  42056106 gtacaaaatcgatgatatggcagggggtaaaccgaaatttgctcaaatta 42056155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 4102916 - 4102996
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattag-agggaatgaacataaatttactcaaatta 376  Q
    |||||||||||| ||||||  || ||  ||||||||||||||||||||||| ||||  | ||| ||||||| |||||||||    
T  4102916 gtacaaaatcgaagatatggcagggggtaaaccgaaatttgctcaaattagaagggggtaaacctaaattttctcaaatta 4102996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 15543963 - 15543912
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  15543963 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 15543912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 23381351 - 23381394
Alignment:
Q  361 aaatttactcaaattacaagggacgaaagtaccatagattttgt 404  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  23381351 aaatttactcaaattacaaggggcgaaagtaccataaattttgt 23381394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 29949683 - 29949732
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||||||||||| || ||| |||||||||||| |||||||||    
T  29949683 gtacaaaatcgatgatatgacaggggataaaccgaaatttcctcaaatta 29949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 16260636 - 16260686
Alignment:
Q  296 agtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||| |||||||| |||||||||| || ||||||||||||||||| |||||    
T  16260636 agtataaaatcgaagatatgatagggggcaaaccgaaatttgctccaatta 16260686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 29878893 - 29878849
Alignment:
Q  360 taaatttactcaaattacaagggacgaaagtaccatagattttgt 404  Q
    ||||||| || |||||||||||||||||| ||||||| |||||||    
T  29878893 taaatttgcttaaattacaagggacgaaaataccataaattttgt 29878849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 332191 - 332240
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||||||    
T  332191 gtacaaaatcgaagatatgataggggataaacagaaatttgctcaaatta 332240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 63281 - 63230
Alignment:
Q  295 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  63281 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 63230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 21770882 - 21770931
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| ||||||  |||||  ||||||||||||||||||||||    
T  21770882 gtacaaaatcgaagatatggcagagggtaaaccgaaatttgctcaaatta 21770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 22152094 - 22152045
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    ||||||||||||||||||| ||||||  |||| |||||||||| ||||||    
T  22152094 gtacaaaatcgatgatatggtagagggtaaactgaaatttgcttaaatta 22152045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 44961133 - 44961182
Alignment:
Q  297 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 346  Q
    |||||||||||| |||||| ||||||  ||||||||||||||| ||||||    
T  44961133 gtacaaaatcgaagatatggtagagggtaaaccgaaatttgctgaaatta 44961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 44961193 - 44961246
Alignment:
Q  325 aaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattaca 378  Q
    |||||||||||||||||||||| | ||  | ||| |||||||||||||||||||    
T  44961193 aaaccgaaatttgctcaaattacatggggttaacctaaatttactcaaattaca 44961246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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