View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20586_high_4 (Length: 246)

Name: NF20586_high_4
Description: NF20586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20586_high_4
NF20586_high_4
[»] chr7 (9 HSPs)
chr7 (137-246)||(10975651-10975760)
chr7 (139-225)||(2624732-2624819)
chr7 (22-58)||(10975881-10975917)
chr7 (139-187)||(32199961-32200009)
chr7 (139-221)||(20054985-20055068)
chr7 (139-188)||(31307978-31308027)
chr7 (139-188)||(31750847-31750896)
chr7 (139-187)||(31863910-31863958)
chr7 (210-246)||(42957488-42957524)
[»] chr5 (9 HSPs)
chr5 (140-246)||(15885515-15885621)
chr5 (139-220)||(31312619-31312701)
chr5 (139-188)||(4561802-4561851)
chr5 (137-188)||(23188764-23188815)
chr5 (138-188)||(6896983-6897033)
chr5 (139-188)||(6117713-6117762)
chr5 (139-188)||(38874536-38874585)
chr5 (139-187)||(8855525-8855573)
chr5 (210-246)||(13153663-13153699)
[»] chr3 (1 HSPs)
chr3 (139-187)||(2985697-2985745)
[»] chr8 (9 HSPs)
chr8 (137-188)||(11830301-11830352)
chr8 (203-246)||(24375817-24375860)
chr8 (139-188)||(2873576-2873625)
chr8 (137-185)||(25653905-25653953)
chr8 (137-188)||(12478699-12478750)
chr8 (137-188)||(35990745-35990796)
chr8 (140-233)||(12719226-12719320)
chr8 (139-188)||(38703796-38703845)
chr8 (139-188)||(41509580-41509629)
[»] chr6 (9 HSPs)
chr6 (137-188)||(1227802-1227853)
chr6 (139-188)||(5460032-5460081)
chr6 (139-188)||(34414469-34414518)
chr6 (137-188)||(16659661-16659712)
chr6 (137-188)||(21544256-21544307)
chr6 (167-220)||(32603619-32603673)
chr6 (139-188)||(22362746-22362795)
chr6 (139-188)||(34077544-34077593)
chr6 (210-246)||(25167053-25167089)
[»] chr4 (6 HSPs)
chr4 (137-188)||(49166771-49166822)
chr4 (139-187)||(25244559-25244607)
chr4 (137-188)||(39133210-39133261)
chr4 (139-224)||(49296163-49296249)
chr4 (139-188)||(42056106-42056155)
chr4 (139-218)||(4102916-4102996)
[»] chr2 (5 HSPs)
chr2 (137-188)||(15543912-15543963)
chr2 (203-246)||(23381351-23381394)
chr2 (139-188)||(29949683-29949732)
chr2 (138-188)||(16260636-16260686)
chr2 (202-246)||(29878849-29878893)
[»] scaffold0002 (1 HSPs)
scaffold0002 (139-188)||(332191-332240)
[»] scaffold0022 (1 HSPs)
scaffold0022 (137-188)||(63230-63281)
[»] chr1 (4 HSPs)
chr1 (139-188)||(21770882-21770931)
chr1 (139-188)||(22152045-22152094)
chr1 (139-188)||(44961133-44961182)
chr1 (167-220)||(44961193-44961246)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 10975651 - 10975760
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattacaagggacgaaagtacca 236  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||    
T  10975651 cagtacaaaatcgatgatatgatagggggtaaaccgaaatttgctcaaattacaggggctaaacataaatttactcaaattacaagggacgaaagtacca 10975750  T
Q  237 tagattttgt 246  Q
    ||||||||||    
T  10975751 tagattttgt 10975760  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 2624819 - 2624732
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt-agagggaatgaacataaatttactcaaattacaaggga 225  Q
    |||||||||||| ||||||| |||||| |||| |||||||||||||||| | ||||  | |||  |||||| ||||||||||||||||    
T  2624819 gtacaaaatcgaagatatgacagaggataaactgaaatttgctcaaattaacagggggtaaaccaaaatttgctcaaattacaaggga 2624732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 10975917 - 10975881
Alignment:
Q  22 tgacccttaatcaaatcaagcttaacagtgttttacc 58  Q
    ||||||||||||||||||||||||| |||||||||||    
T  10975917 tgacccttaatcaaatcaagcttaatagtgttttacc 10975881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 32200009 - 32199961
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 187  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||||||||    
T  32200009 gtacaaaatcgatgatatggtagggggtaaaccgaaatttgctcaaatt 32199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 20055068 - 20054985
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta-gagggaatgaacataaatttactcaaattacaa 221  Q
    ||||||||| || ||||||| |||||  ||||||||||||||||||||||  ||||  | ||| ||||||| ||||||||||||    
T  20055068 gtacaaaattgaagatatgacagagggtaaaccgaaatttgctcaaattacaagggggtaaacctaaatttgctcaaattacaa 20054985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 31307978 - 31308027
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||  || || |||||||||||||||||||||||    
T  31307978 gtacaaaatcgaagatatggcagggggcaaaccgaaatttgctcaaatta 31308027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 31750847 - 31750896
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  31750847 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 31750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 31863958 - 31863910
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 187  Q
    |||||||||||||||||||| |  ||  |||||||||||||||||||||    
T  31863958 gtacaaaatcgatgatatgacaaggggtaaaccgaaatttgctcaaatt 31863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 42957524 - 42957488
Alignment:
Q  210 ctcaaattacaagggacgaaagtaccatagattttgt 246  Q
    |||||||||||||||||||||||||| || |||||||    
T  42957524 ctcaaattacaagggacgaaagtaccttaaattttgt 42957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 15885621 - 15885515
Alignment:
Q  140 tacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattacaagggacgaaagtaccatag 239  Q
    ||||||||| ||||||||  || ||  |||||||||||||||||||||| ||||  | ||   ||||||||||||||||||||||   |||||||||||     
T  15885621 tacaaaatcaatgatatggcagggggtaaaccgaaatttgctcaaattacagggggtaaaacaaaatttactcaaattacaaggggaaaaagtaccataa 15885522  T
Q  240 attttgt 246  Q
    |||||||    
T  15885521 attttgt 15885515  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 31312701 - 31312619
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta-gagggaatgaacataaatttactcaaattaca 220  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||  |||| || ||| ||||||| |||||||||||    
T  31312701 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaattacaaggggataaacctaaatttgctcaaattaca 31312619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 4561851 - 4561802
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  4561851 gtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 4561802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 23188815 - 23188764
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  23188815 cagtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 23188764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 6897033 - 6896983
Alignment:
Q  138 agtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    ||||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  6897033 agtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 6896983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 6117713 - 6117762
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||  |||||| |||| |||||||||||||||||    
T  6117713 gtacaaaatcgaagatatggcagaggataaacggaaatttgctcaaatta 6117762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 38874585 - 38874536
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||||||| ||  ||||||||||||||| ||||||    
T  38874585 gtacaaaatcgaagatatgatagggggtaaaccgaaatttgctaaaatta 38874536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 8855525 - 8855573
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 187  Q
    ||||||||||||||||||| ||| |||  ||| ||||||||||||||||    
T  8855525 gtacaaaatcgatgatatggtaggggagtaactgaaatttgctcaaatt 8855573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 13153699 - 13153663
Alignment:
Q  210 ctcaaattacaagggacgaaagtaccatagattttgt 246  Q
    |||||||||||||||||||||||||| || |||||||    
T  13153699 ctcaaattacaagggacgaaagtaccgtaaattttgt 13153663  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 2985745 - 2985697
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 187  Q
    |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  2985745 gtacaaaatcgatgatatggcagaggataaaccgaaatttgctcaaatt 2985697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 11830301 - 11830352
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  11830301 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 11830352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 24375860 - 24375817
Alignment:
Q  203 aaatttactcaaattacaagggacgaaagtaccatagattttgt 246  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  24375860 aaatttgctcaaattacaagggacgaaagtaccataaattttgt 24375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 2873576 - 2873625
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  2873576 gtacaaaatcgaagatatgacaggggataaaccgaaatttgctcaaatta 2873625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 25653953 - 25653905
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaa 185  Q
    |||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  25653953 cagtacaaaatcgaagatatggtagagggtaaaccgaaatttgctcaaa 25653905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 12478699 - 12478750
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  12478699 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 12478750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 35990796 - 35990745
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    ||||||||||||||  ||||||||| ||  ||||||||||||||||||||||    
T  35990796 cagtacaaaatcgaaaatatgatagggggtaaaccgaaatttgctcaaatta 35990745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 12719320 - 12719226
Alignment:
Q  140 tacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattaga-gggaatgaacataaatttactcaaattacaagggacgaaagta 233  Q
    ||||||||||||||||||  ||  |  |||||||||||||||||||||||| |||  | |||  |||| | ||||||||||||||| ||||||||    
T  12719320 tacaaaatcgatgatatggcaggaggtaaaccgaaatttgctcaaattagaggggggtaaactaaaatctgctcaaattacaaggggcgaaagta 12719226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 38703845 - 38703796
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  38703845 gtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 38703796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 41509629 - 41509580
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||| || ||  ||||||||||||||||||||||    
T  41509629 gtacaaaatcgaagatatgacagggggtaaaccgaaatttgctcaaatta 41509580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 1227802 - 1227853
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  1227802 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 1227853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 5460081 - 5460032
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  5460081 gtacaaaatcgatgttatggtaggggataaaccgaaatttgctcaaatta 5460032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 34414518 - 34414469
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||| |||||| ||| ||||||||||||||||||    
T  34414518 gtacaaaatcgaagatatgacagaggataaatcgaaatttgctcaaatta 34414469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 16659712 - 16659661
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  16659712 cagtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 16659661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 21544256 - 21544307
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  21544256 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 21544307  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 32603673 - 32603619
Alignment:
Q  167 aaaccgaaatttgctcaaattag-agggaatgaacataaatttactcaaattaca 220  Q
    ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||    
T  32603673 aaaccgaaatttgctcaaattagaagggggtaaacctaaatttactcaaattaca 32603619  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 22362746 - 22362795
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||||||  ||  ||||||||||||||||||||||    
T  22362746 gtacaaaatcgaagatatgataagggttaaaccgaaatttgctcaaatta 22362795  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 34077593 - 34077544
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||| ||| ||  ||||||||||||||||||||||    
T  34077593 gtacaaaatcgaagatatggtagggggtaaaccgaaatttgctcaaatta 34077544  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 25167053 - 25167089
Alignment:
Q  210 ctcaaattacaagggacgaaagtaccatagattttgt 246  Q
    |||||||||||||||||||||||||| || |||||||    
T  25167053 ctcaaattacaagggacgaaagtaccttaaattttgt 25167089  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 49166771 - 49166822
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  49166771 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 49166822  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 25244607 - 25244559
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt 187  Q
    ||||||||||||||||||||||| ||  ||||||||| |||||||||||    
T  25244607 gtacaaaatcgatgatatgatagggggtaaaccgaaaattgctcaaatt 25244559  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 39133210 - 39133261
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| ||||||  || ||||||| ||||||||||||||||||    
T  39133210 cagtacaaaatcgaagatatggcaggggacaaatcgaaatttgctcaaatta 39133261  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 49296249 - 49296163
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatt-agagggaatgaacataaatttactcaaattacaaggg 224  Q
    |||||||||||| ||||||  || || |||||||||||||||||||||| | ||||  | |||  |||||| |||||||||||||||    
T  49296249 gtacaaaatcgaagatatggcagggggcaaaccgaaatttgctcaaattaacagggggtaaactgaaattttctcaaattacaaggg 49296163  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 42056106 - 42056155
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||||||||  || ||  ||||||||||||||||||||||    
T  42056106 gtacaaaatcgatgatatggcagggggtaaaccgaaatttgctcaaatta 42056155  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 4102916 - 4102996
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaattag-agggaatgaacataaatttactcaaatta 218  Q
    |||||||||||| ||||||  || ||  ||||||||||||||||||||||| ||||  | ||| ||||||| |||||||||    
T  4102916 gtacaaaatcgaagatatggcagggggtaaaccgaaatttgctcaaattagaagggggtaaacctaaattttctcaaatta 4102996  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 15543963 - 15543912
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  15543963 cagtacaaaatcgaagatatgatagggggtaaaccgaaatttgctcaaatta 15543912  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 23381351 - 23381394
Alignment:
Q  203 aaatttactcaaattacaagggacgaaagtaccatagattttgt 246  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  23381351 aaatttactcaaattacaaggggcgaaagtaccataaattttgt 23381394  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 29949683 - 29949732
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||||||||||| || ||| |||||||||||| |||||||||    
T  29949683 gtacaaaatcgatgatatgacaggggataaaccgaaatttcctcaaatta 29949732  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 16260636 - 16260686
Alignment:
Q  138 agtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||| |||||||| |||||||||| || ||||||||||||||||| |||||    
T  16260636 agtataaaatcgaagatatgatagggggcaaaccgaaatttgctccaatta 16260686  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 29878893 - 29878849
Alignment:
Q  202 taaatttactcaaattacaagggacgaaagtaccatagattttgt 246  Q
    ||||||| || |||||||||||||||||| ||||||| |||||||    
T  29878893 taaatttgcttaaattacaagggacgaaaataccataaattttgt 29878849  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 332191 - 332240
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||||||    
T  332191 gtacaaaatcgaagatatgataggggataaacagaaatttgctcaaatta 332240  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 63281 - 63230
Alignment:
Q  137 cagtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| | |||||||||| ||  ||||||||||||||||||||||    
T  63281 cagtacaaaatcaaagatatgatagggggtaaaccgaaatttgctcaaatta 63230  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 21770882 - 21770931
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| ||||||  |||||  ||||||||||||||||||||||    
T  21770882 gtacaaaatcgaagatatggcagagggtaaaccgaaatttgctcaaatta 21770931  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 22152094 - 22152045
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    ||||||||||||||||||| ||||||  |||| |||||||||| ||||||    
T  22152094 gtacaaaatcgatgatatggtagagggtaaactgaaatttgcttaaatta 22152045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 44961133 - 44961182
Alignment:
Q  139 gtacaaaatcgatgatatgatagaggacaaaccgaaatttgctcaaatta 188  Q
    |||||||||||| |||||| ||||||  ||||||||||||||| ||||||    
T  44961133 gtacaaaatcgaagatatggtagagggtaaaccgaaatttgctgaaatta 44961182  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 44961193 - 44961246
Alignment:
Q  167 aaaccgaaatttgctcaaattagagggaatgaacataaatttactcaaattaca 220  Q
    |||||||||||||||||||||| | ||  | ||| |||||||||||||||||||    
T  44961193 aaaccgaaatttgctcaaattacatggggttaacctaaatttactcaaattaca 44961246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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