View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20586_high_6 (Length: 205)

Name: NF20586_high_6
Description: NF20586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20586_high_6
NF20586_high_6
[»] chr7 (5 HSPs)
chr7 (22-205)||(10975736-10975917)
chr7 (43-97)||(24478027-24478081)
chr7 (53-98)||(39580165-39580210)
chr7 (43-98)||(13263872-13263928)
chr7 (53-97)||(39065396-39065440)
[»] chr2 (8 HSPs)
chr2 (157-201)||(23381374-23381418)
chr2 (43-97)||(26498512-26498566)
chr2 (43-86)||(38127766-38127809)
chr2 (43-97)||(29097067-29097121)
chr2 (168-205)||(29878836-29878873)
chr2 (168-201)||(31989538-31989571)
chr2 (62-98)||(32449917-32449953)
chr2 (43-87)||(36525602-36525646)
[»] chr6 (9 HSPs)
chr6 (43-97)||(20504410-20504464)
chr6 (43-97)||(10546179-10546233)
chr6 (43-86)||(8237987-8238030)
chr6 (43-98)||(10343799-10343853)
chr6 (162-205)||(25167065-25167108)
chr6 (43-85)||(13552611-13552653)
chr6 (43-97)||(16659517-16659571)
chr6 (43-86)||(1227679-1227723)
chr6 (53-97)||(13114411-13114455)
[»] chr3 (5 HSPs)
chr3 (152-201)||(22438711-22438760)
chr3 (61-98)||(4658917-4658954)
chr3 (62-98)||(15309105-15309141)
chr3 (43-86)||(23626248-23626291)
chr3 (43-88)||(31073693-31073738)
[»] chr8 (10 HSPs)
chr8 (43-86)||(12936463-12936506)
chr8 (43-97)||(34227330-34227385)
chr8 (168-205)||(24375804-24375841)
chr8 (43-86)||(23389350-23389393)
chr8 (43-97)||(2873765-2873819)
chr8 (43-85)||(8441921-8441963)
chr8 (168-205)||(23289062-23289099)
chr8 (53-97)||(960497-960541)
chr8 (43-86)||(25654033-25654077)
chr8 (43-87)||(35773151-35773195)
[»] chr5 (10 HSPs)
chr5 (156-195)||(20024144-20024183)
chr5 (47-97)||(31567641-31567691)
chr5 (43-97)||(37082274-37082328)
chr5 (43-98)||(6117899-6117955)
chr5 (43-86)||(4413930-4413973)
chr5 (43-86)||(12148237-12148280)
chr5 (43-86)||(31920063-31920106)
chr5 (153-199)||(15885487-15885533)
chr5 (44-97)||(41184946-41184999)
chr5 (50-98)||(10819395-10819443)
[»] scaffold0022 (1 HSPs)
scaffold0022 (43-86)||(63360-63403)
[»] chr4 (5 HSPs)
chr4 (43-86)||(29104162-29104205)
chr4 (43-86)||(31226510-31226553)
chr4 (43-86)||(49300740-49300783)
chr4 (52-97)||(13780413-13780458)
chr4 (53-97)||(35539780-35539824)
[»] scaffold0003 (2 HSPs)
scaffold0003 (43-85)||(306796-306838)
scaffold0003 (168-201)||(306693-306726)
[»] scaffold0002 (1 HSPs)
scaffold0002 (43-97)||(332068-332122)
[»] chr1 (3 HSPs)
chr1 (62-96)||(42086223-42086257)
chr1 (53-97)||(18458802-18458846)
chr1 (53-97)||(24987621-24987665)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 10975917 - 10975736
Alignment:
Q  22 tgacccttaatcaaatcaagcttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaatcnnnnnnnnnnnagattctatcc 121  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||| |||             ||||||  |||    
T  10975917 tgacccttaatcaaatcaagcttaatagtgttttaccccctgtaatataggttattttcgatttttctcctgcaaa--cttttttctttagattccgtcc 10975820  T
Q  122 ttgtaatttgaagannnnnnnggttttgcccccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtccc 205  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975819 ttgtaatttgaagatttttttggttttgcccccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtccc 10975736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 24478027 - 24478081
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  24478027 ttaatagtgttttaccccctgtaatataggtcatttccggtttttcccctgtaaa 24478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 39580210 - 39580165
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaat 98  Q
    |||||||  |||||||||||| |||||||||||| |||||||||||    
T  39580210 tttaccccctgtaatataggtcatttccggttttcctcctgtaaat 39580165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 13263872 - 13263928
Alignment:
Q  43 ttaatagtgttttacccaa-tgtaatataggttatttccggtttttctcctgtaaat 98  Q
    |||||||||||||||||   |||||||||||| |||||||||||| | |||||||||    
T  13263872 ttaatagtgttttacccccctgtaatataggtcatttccggttttacccctgtaaat 13263928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 39065396 - 39065440
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||    
T  39065396 tttaccccctgtaatataggtcatttccggtttttcccctgtaaa 39065440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 23381418 - 23381374
Alignment:
Q  157 gtaaaatctttatggcatcaaattacaaaatctatggtactttcg 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  23381418 gtaaaatctttatggcatcaaattacaaaatttatggtactttcg 23381374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 26498512 - 26498566
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||| ||  ||||||||| ||||||||||||||||| ||||||||    
T  26498512 ttaatagtgttttatcccctgtaatatatgttatttccggtttttcccctgtaaa 26498566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 38127766 - 38127809
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  38127766 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 38127809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 29097121 - 29097067
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  ||||||||| ||||||| |||||||  |||||||||    
T  29097121 ttaatagtgttttaccccttgtaatataagttattttcggttttcttcctgtaaa 29097067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 29878836 - 29878873
Alignment:
Q  168 atggcatcaaattacaaaatctatggtactttcgtccc 205  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  29878836 atggcatcaaattacaaaatttatggtattttcgtccc 29878873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 31989571 - 31989538
Alignment:
Q  168 atggcatcaaattacaaaatctatggtactttcg 201  Q
    |||||||||||||||||||| |||||||||||||    
T  31989571 atggcatcaaattacaaaatttatggtactttcg 31989538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 32449953 - 32449917
Alignment:
Q  62 tgtaatataggttatttccggtttttctcctgtaaat 98  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  32449953 tgtaatataggtcatttctggtttttctcctgtaaat 32449917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 36525646 - 36525602
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggttttt 87  Q
    |||||||||||||||||  |||||||||||| |||| ||||||||    
T  36525646 ttaatagtgttttaccccctgtaatataggtcattttcggttttt 36525602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 20504464 - 20504410
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||    
T  20504464 ttaatagtgttttaccccatgtaatataggtcatttctggtttttctcttgtaaa 20504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 10546233 - 10546179
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  |||||||||||| |||| ||||||||| ||||||||    
T  10546233 ttaatagtgttttaccctctgtaatataggtcattttcggtttttcccctgtaaa 10546179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 8238030 - 8237987
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  8238030 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 8237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 10343853 - 10343799
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaat 98  Q
    |||||||||||||||||  ||||||||| || |||||||||||||| |||||||||    
T  10343853 ttaatagtgttttacccc-tgtaatatatgtcatttccggtttttcccctgtaaat 10343799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 25167108 - 25167065
Alignment:
Q  162 atctttatggcatcaaattacaaaatctatggtactttcgtccc 205  Q
    ||||| |||||||||||||||||||| || ||||||||||||||    
T  25167108 atcttcatggcatcaaattacaaaatttaaggtactttcgtccc 25167065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 13552611 - 13552653
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggttt 85  Q
    |||||||||||||||||  |||||||||||| |||||||||||    
T  13552611 ttaatagtgttttaccctttgtaatataggtcatttccggttt 13552653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16659517 - 16659571
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||| ||||||||  |||||||||||| |||||||||||| | ||||||||    
T  16659517 ttaatagtattttaccctctgtaatataggtcatttccggttttccccctgtaaa 16659571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 1227679 - 1227723
Alignment:
Q  43 ttaatagtgttttacccaa-tgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||   |||||||||||||||||||||||||    
T  1227679 ttaatagtgttttaccctcctgtaatataggttatttccggtttt 1227723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 13114411 - 13114455
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||    
T  13114411 tttaccccctgtaatataggtcattttcggtttttctcctgtaaa 13114455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 22438711 - 22438760
Alignment:
Q  152 cccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcg 201  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  22438711 ccctagtaaaatctttatggcatcaaattacaaaatttattgtactttcg 22438760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 4658954 - 4658917
Alignment:
Q  61 atgtaatataggttatttccggtttttctcctgtaaat 98  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  4658954 atgtaatataggtcatttccggtttttctcctgtaaat 4658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 15309105 - 15309141
Alignment:
Q  62 tgtaatataggttatttccggtttttctcctgtaaat 98  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15309105 tgtaatataggttatttccggtttttcccctgtaaat 15309141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 23626291 - 23626248
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  23626291 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 23626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 31073693 - 31073738
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttc 88  Q
    ||||||||||||||||| ||||||||||||| |||| || ||||||    
T  31073693 ttaatagtgttttaccccatgtaatataggtcattttcgatttttc 31073738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 12936506 - 12936463
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  12936506 ttaatagtgttttacccaatgtaatatatgtcatttccggtttt 12936463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 34227330 - 34227385
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt-tctcctgtaaa 97  Q
    |||||||||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  34227330 ttaatagtgttttaccccctgtaatataggtcatttccggttttatctcctgtaaa 34227385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 24375804 - 24375841
Alignment:
Q  168 atggcatcaaattacaaaatctatggtactttcgtccc 205  Q
    |||||||||||||||||||| |||||||||||||||||    
T  24375804 atggcatcaaattacaaaatttatggtactttcgtccc 24375841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 23389393 - 23389350
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||| |||||||||||| |||| |||||||    
T  23389393 ttaatagtgttttacccactgtaatataggtcattttcggtttt 23389350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 2873819 - 2873765
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  ||||||||| || |||| ||||||| ||||||||||    
T  2873819 ttaatagtgttttaccccctgtaatataagtcattttcggttttcctcctgtaaa 2873765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 8441921 - 8441963
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggttt 85  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  8441921 ttaatagtgttttaccccatgtaatataggtcattttcggttt 8441963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 23289099 - 23289062
Alignment:
Q  168 atggcatcaaattacaaaatctatggtactttcgtccc 205  Q
    |||||||||||||||||||| || ||||||||||||||    
T  23289099 atggcatcaaattacaaaatttaaggtactttcgtccc 23289062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 960541 - 960497
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| |||||||||||| ||||||||||    
T  960541 tttaccccctgtaatataggtcatttccggttttcctcctgtaaa 960497  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 25654077 - 25654033
Alignment:
Q  43 ttaatagtgtttta-cccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||| ||| ||||||||||||| ||||||||||||    
T  25654077 ttaatagtgttttaaccccatgtaatataggtcatttccggtttt 25654033  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 35773151 - 35773195
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggttttt 87  Q
    |||||||||||||||||  |||||||||||| |||| ||||||||    
T  35773151 ttaatagtgttttaccctctgtaatataggtcattttcggttttt 35773195  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 20024144 - 20024183
Alignment:
Q  156 tgtaaaatctttatggcatcaaattacaaaatctatggta 195  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20024144 tgtaaaatctttatggcatcaaattacaaaatttatggta 20024183  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 31567641 - 31567691
Alignment:
Q  47 tagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    ||||| |||||||| ||||||||||||||||| ||||||| ||||||||||    
T  31567641 tagtgatttacccattgtaatataggttattttcggttttcctcctgtaaa 31567691  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 37082328 - 37082274
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  37082328 ttaatagtgttttaccccctgtaatataggtaatttccggttttacccctgtaaa 37082274  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 6117955 - 6117899
Alignment:
Q  43 ttaatagtgttttacc-caatgtaatataggttatttccggtttttctcctgtaaat 98  Q
    |||||||||||||||| | ||||||||||||| |||||||||||| | |||||||||    
T  6117955 ttaatagtgttttacctccatgtaatataggtcatttccggttttccccctgtaaat 6117899  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 4413930 - 4413973
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  4413930 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 4413973  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 12148280 - 12148237
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  12148280 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 12148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 31920063 - 31920106
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||||||||||| ||||    
T  31920063 ttaatagtgttttaccccctgtaatataggttatttccgctttt 31920106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 15885487 - 15885533
Alignment:
Q  153 ccttgtaaaatctttatggcatcaaattacaaaatctatggtacttt 199  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||    
T  15885487 ccttgtaaaatctgtatggcatcaacgtacaaaatttatggtacttt 15885533  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 41184946 - 41184999
Alignment:
Q  44 taatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||| ||||||||||||| |||| || |||| | ||||||||    
T  41184946 taatagtgttttaccccatgtaatataggtcattttcgattttccccctgtaaa 41184999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 10819395 - 10819443
Alignment:
Q  50 tgttttacccaatgtaatataggttatttccggtttttctcctgtaaat 98  Q
    ||||||| || ||||||||||| | ||||| ||||||||||||||||||    
T  10819395 tgttttaacccatgtaatatagatcatttctggtttttctcctgtaaat 10819443  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 63403 - 63360
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  63403 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 63360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 29104162 - 29104205
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  29104162 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 29104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 31226553 - 31226510
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  31226553 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 31226510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 49300740 - 49300783
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttt 86  Q
    |||||||||||||||||  |||||||||||| ||||||||||||    
T  49300740 ttaatagtgttttaccccctgtaatataggtcatttccggtttt 49300783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 13780458 - 13780413
Alignment:
Q  52 ttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||| ||||||||||||| ||||||| |||| ||||||||||    
T  13780458 ttttaccccatgtaatataggtcatttccgattttcctcctgtaaa 13780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 35539824 - 35539780
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| ||||||||||||| |||||||||    
T  35539824 tttaccccctgtaatataggtcatttccggtttttttcctgtaaa 35539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 306838 - 306796
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggttt 85  Q
    |||||||||||||||||  |||||||||||| |||||||||||    
T  306838 ttaatagtgttttaccccgtgtaatataggtcatttccggttt 306796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 306726 - 306693
Alignment:
Q  168 atggcatcaaattacaaaatctatggtactttcg 201  Q
    |||||||||||||||||||| |||||||||||||    
T  306726 atggcatcaaattacaaaatttatggtactttcg 306693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 332068 - 332122
Alignment:
Q  43 ttaatagtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||||||||||||  |||||||||||| |||| ||||||| | ||||||||    
T  332068 ttaatagtgttttaccccctgtaatataggtcattttcggttttccccctgtaaa 332122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 42086223 - 42086257
Alignment:
Q  62 tgtaatataggttatttccggtttttctcctgtaa 96  Q
    ||||||||||||||||| |||||||||||||||||    
T  42086223 tgtaatataggttattttcggtttttctcctgtaa 42086257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 18458846 - 18458802
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| |||||||||||| ||||||||||    
T  18458846 tttaccccctgtaatataggtcatttccggttttcctcctgtaaa 18458802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 24987621 - 24987665
Alignment:
Q  53 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 97  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||    
T  24987621 tttaccccctgtaatataggtcatttccggtttttcccctgtaaa 24987665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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