View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20586_low_1 (Length: 411)
Name: NF20586_low_1
Description: NF20586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20586_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 34860794 - 34860600
Alignment:
| Q |
1 |
tttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcact |
100 |
Q |
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| T |
34860794 |
tttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcact |
34860695 |
T |
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| Q |
101 |
tgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
195 |
Q |
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| T |
34860694 |
tgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 219 - 393
Target Start/End: Complemental strand, 34860584 - 34860410
Alignment:
| Q |
219 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
318 |
Q |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
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| Q |
319 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttg |
393 |
Q |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttg |
34860410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
19 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
118 |
Q |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
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| Q |
119 |
taatatttttg-tttgaaagtggattatagatttagggt |
156 |
Q |
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| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 34860895 - 34860788
Alignment:
| Q |
25 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
124 |
Q |
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| T |
34860895 |
ttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataa |
34860796 |
T |
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| Q |
125 |
ttttgttt |
132 |
Q |
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| T |
34860795 |
ttttgttt |
34860788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
219 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
305 |
Q |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
104 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
178 |
Q |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
19 |
tatgatttggatctttagttatgttgaagttcatatatga |
58 |
Q |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 5757427 - 5757387
Alignment:
| Q |
225 |
tctccctacttaaatacaacaaatct-ttttaccacttctc |
264 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||| |
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| T |
5757427 |
tctccctactcaaatacaacaaatcttttttaccacttctc |
5757387 |
T |
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