View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20587_low_1 (Length: 808)
Name: NF20587_low_1
Description: NF20587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20587_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 17 - 800
Target Start/End: Original strand, 39981902 - 39982685
Alignment:
| Q |
17 |
aatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtnnnnnnnttagtaaagtagttttta |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39981902 |
aatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtaaaaaaattagtaaagtagttttta |
39982001 |
T |
|
| Q |
117 |
atcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctgagtgccactgccaacaaactgtc |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982002 |
atcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctgagtgccactgccaacaaactgtc |
39982101 |
T |
|
| Q |
217 |
aaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982102 |
aaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatcta |
39982201 |
T |
|
| Q |
317 |
aactgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctct |
416 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982202 |
aattgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctct |
39982301 |
T |
|
| Q |
417 |
tattacatggaccagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982302 |
tattacatggaccagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaa |
39982401 |
T |
|
| Q |
517 |
gaggtggtatagagataccaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgccttt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39982402 |
gaggtggtatagagataccaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgccttt |
39982501 |
T |
|
| Q |
617 |
aaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggcca |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982502 |
aaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggcca |
39982601 |
T |
|
| Q |
717 |
ttatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
800 |
Q |
| |
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| T |
39982602 |
ttatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
39982685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 7e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 446 - 799
Target Start/End: Original strand, 44914329 - 44914682
Alignment:
| Q |
446 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
545 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || || | ||||||||||| ||| ||||| |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
546 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
645 |
Q |
| |
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| ||||| || |||| |||| | ||| |||| | || |||||| |||| |||| || |||||||||| ||||| |||| || || |||| | ||| |
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| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
646 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
745 |
Q |
| |
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||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
746 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
799 |
Q |
| |
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||||| ||||| ||||| |||||||| |||||| | |||||||||||||||| |
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| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 798
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
582 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
681 |
Q |
| |
|
|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
682 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
781 |
Q |
| |
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||| || ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||| | || ||||| ||| | ||||||||||||||| | |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
|
| Q |
782 |
tttgttccttttgatga |
798 |
Q |
| |
|
||||||||||||||| |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 582 - 798
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
582 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
681 |
Q |
| |
|
|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
682 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
781 |
Q |
| |
|
||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
|
| Q |
782 |
tttgttccttttgatga |
798 |
Q |
| |
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||||||||||| |||| |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 44913683 - 44913808
Alignment:
| Q |
177 |
ttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccgga |
276 |
Q |
| |
|
|||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
44913683 |
ttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctga |
44913782 |
T |
|
| Q |
277 |
tgacacaggatatatcttggtaatta |
302 |
Q |
| |
|
||| || |||| |||| ||||||||| |
|
|
| T |
44913783 |
tgatactggatttatcatggtaatta |
44913808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 677 - 799
Target Start/End: Complemental strand, 46562263 - 46562141
Alignment:
| Q |
677 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
776 |
Q |
| |
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||||| || |||||||| || || || || |||||||| | || ||| |||||||||| |||||||||||||||||||||| | |||||||| ||| |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
|
| Q |
777 |
gcgcttttgttccttttgatgat |
799 |
Q |
| |
|
| | | ||||||| ||||||||| |
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|
| T |
46562163 |
gagttgttgttccctttgatgat |
46562141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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