View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20587_low_2 (Length: 752)

Name: NF20587_low_2
Description: NF20587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20587_low_2
NF20587_low_2
[»] chr7 (4 HSPs)
chr7 (14-736)||(28071268-28071990)
chr7 (483-519)||(1668359-1668395)
chr7 (462-526)||(34925254-34925318)
chr7 (457-552)||(23117277-23117372)
[»] chr2 (6 HSPs)
chr2 (457-508)||(29378603-29378654)
chr2 (457-556)||(38434153-38434252)
chr2 (463-584)||(27309609-27309730)
chr2 (483-552)||(44460379-44460448)
chr2 (462-505)||(35849472-35849515)
chr2 (462-503)||(24098479-24098520)
[»] chr5 (1 HSPs)
chr5 (490-556)||(42440139-42440205)
[»] chr3 (2 HSPs)
chr3 (523-607)||(28802757-28802841)
chr3 (483-556)||(36303135-36303208)
[»] chr8 (1 HSPs)
chr8 (463-526)||(26466092-26466155)
[»] chr6 (1 HSPs)
chr6 (464-509)||(25192095-25192140)
[»] chr4 (1 HSPs)
chr4 (462-508)||(48244389-48244435)
[»] chr1 (1 HSPs)
chr1 (462-516)||(10363450-10363504)
[»] scaffold0137 (1 HSPs)
scaffold0137 (462-503)||(36033-36074)


Alignment Details
Target: chr7 (Bit Score: 703; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 14 - 736
Target Start/End: Complemental strand, 28071990 - 28071268
Alignment:
Q  14 attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071990 attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg 28071891  T
Q  114 gatgagttaggcctaaaatctaatatggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtcccgt 213  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28071890 gatgagttaggcctaaaacctaatgtggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtccagt 28071791  T
Q  214 attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgattttatgggactaagttatacctaaaatctaagagtcgcaatta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071790 attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgattttatgggactaagttatacctaaaatctaagagtcgcaatta 28071691  T
Q  314 tgtttagaattttgagggtcttttcaagaatatccctcaaatcatagggttggatttagactacacccttcatgtaaaagaattttaagaataactattg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071690 tgtttagaattttgagggtcttttcaagaatatccctcaaatcatagggttggatttagactacacccttcatgtaaaagaattttaagaataactattg 28071591  T
Q  414 tctttttactaaactctatagttataatatcataagataatttcagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgtt 513  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071590 tctttttactaaactctatagttataatatcataaaataatttcagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgtt 28071491  T
Q  514 acaatgttatagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctatgtaact 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28071490 acaatgttatagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctatgcaact 28071391  T
Q  614 gtgctgctatagccactatgtggcagcacaaataaagacctgtgagtttaacatgaatggataagtagaacacaaacttgtttaagaagtaacagaaaac 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071390 gtgctgctatagccactatgtggcagcacaaataaagacctgtgagtttaacatgaatggataagtagaacacaaacttgtttaagaagtaacagaaaac 28071291  T
Q  714 ttacatgctcacattgtaataca 736  Q
    |||||||||||||||||||||||    
T  28071290 ttacatgctcacattgtaataca 28071268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 1668359 - 1668395
Alignment:
Q  483 aaatagcggtttgttcaaattccactatgttacaatg 519  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1668359 aaatagcggtttgttcaaattccactatgctacaatg 1668395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 526
Target Start/End: Original strand, 34925254 - 34925318
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagc 526  Q
    |||||||| |||||| |||| ||||||| ||||||||||||||  ||||| ||||||| ||||||    
T  34925254 ttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagc 34925318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 552
Target Start/End: Original strand, 23117277 - 23117372
Alignment:
Q  457 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaaca 552  Q
    |||| |||||||| || ||||| || |||||| |||||||||||||||| ||| || ||| || |||||| |||| ||| || |||||| ||||||    
T  23117277 cagtgttgtcaattgcggattgcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaaca 23117372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 508
Target Start/End: Complemental strand, 29378654 - 29378603
Alignment:
Q  457 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccact 508  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  29378654 cagtgttgtcaatcgcggatcgtgggaaatagcggtttgttcaaattccact 29378603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 457 - 556
Target Start/End: Complemental strand, 38434252 - 38434153
Alignment:
Q  457 cagtattgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 556  Q
    |||| ||||||||||||||    || ||||||| ||||||||||||||  |||||||||| || ||||||| ||| |||| |||||||| ||||||||||    
T  38434252 cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagcaatgctataatcgctatttaacaacacttt 38434153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 463 - 584
Target Start/End: Complemental strand, 27309730 - 27309609
Alignment:
Q  463 tgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacactttatatta 562  Q
    |||||||| |||||||  | ||||| ||||||||||| ||||  ||||| |||| || |||||||||   ||| ||||||||||||||||||||||| ||    
T  27309730 tgtcaatcacagattgctgaaaatatcggtttgttcatattctgctatgctacagtgctatagcactattatatccgctatttgacaacactttatacta 27309631  T
Q  563 tatcatatatcgcggaatagta 584  Q
     ||| | |||||  ||||||||    
T  27309630 aatcgtgtatcgtagaatagta 27309609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 483 - 552
Target Start/End: Complemental strand, 44460448 - 44460379
Alignment:
Q  483 aaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaaca 552  Q
    ||||||||||||||||||||| ||||||| |||||||||  ||||| || ||||  ||||||||||||||    
T  44460448 aaatagcggtttgttcaaatttcactatgctacaatgttgaagcaccgcaataattgctatttgacaaca 44460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 462 - 505
Target Start/End: Original strand, 35849472 - 35849515
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattcc 505  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  35849472 ttgtcaattgcagattgtggaaaatagcggtttgttcaaattcc 35849515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 24098520 - 24098479
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaatt 503  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  24098520 ttgtcaatcacagattgtggaaaataggggtttgttcaaatt 24098479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 42440205 - 42440139
Alignment:
Q  490 ggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 556  Q
    |||||||||||||||| ||||| |||| |||||||||||||| ||| || ||||||||||| |||||    
T  42440205 ggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaaaacttt 42440139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 607
Target Start/End: Original strand, 28802757 - 28802841
Alignment:
Q  523 tagcactgccataaccgctatttgacaacactttatattatatcatatatcgcggaatagtactggtttgttaaaattccgctat 607  Q
    |||| |||| ||| || ||||||||||||||||||||||| ||   ||||||||||| | || ||||||| ||||||||||||||    
T  28802757 tagcgctgctatagccactatttgacaacactttatattaaatagcatatcgcggaacaatagtggtttggtaaaattccgctat 28802841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 556
Target Start/End: Complemental strand, 36303208 - 36303135
Alignment:
Q  483 aaatagcggtttgttcaaattccactatgttacaatgttatagcactgccataaccgctatttgacaacacttt 556  Q
    ||||||||||||||||||||||| ||||  ||||  | ||||||||  ||||  | ||||||||||||||||||    
T  36303208 aaatagcggtttgttcaaattccgctatagtacagcgctatagcaccaccattccagctatttgacaacacttt 36303135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 526
Target Start/End: Complemental strand, 26466155 - 26466092
Alignment:
Q  463 tgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttacaatgttatagc 526  Q
    ||||||||  ||||| ||| ||||| ||||||||||||||||||||||| ||||||| ||||||    
T  26466155 tgtcaatcatagattttggaaaataacggtttgttcaaattccactatgctacaatgatatagc 26466092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 509
Target Start/End: Complemental strand, 25192140 - 25192095
Alignment:
Q  464 gtcaatcgcagattgtgggaaatagcggtttgttcaaattccacta 509  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||    
T  25192140 gtcaatcacagattgtgggaaatagcggtctattcaaattccacta 25192095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 508
Target Start/End: Original strand, 48244389 - 48244435
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccact 508  Q
    |||||||| |||||| |||| || |||||||||||||||||||||||    
T  48244389 ttgtcaattgcagatagtggaaattagcggtttgttcaaattccact 48244435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 516
Target Start/End: Complemental strand, 10363504 - 10363450
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaattccactatgttaca 516  Q
    |||||||||||||||  ||| |||||||  ||||||||||||||||||| |||||    
T  10363504 ttgtcaatcgcagatcatggaaaatagcattttgttcaaattccactatattaca 10363450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 503
Target Start/End: Original strand, 36033 - 36074
Alignment:
Q  462 ttgtcaatcgcagattgtgggaaatagcggtttgttcaaatt 503  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36033 ttgtcaattgcagattgtggaaaatagcggtttgttccaatt 36074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University