View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20587_low_3 (Length: 592)

Name: NF20587_low_3
Description: NF20587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20587_low_3
NF20587_low_3
[»] chr3 (5 HSPs)
chr3 (417-540)||(3670601-3670724)
chr3 (138-227)||(3670299-3670380)
chr3 (465-540)||(19825357-19825432)
chr3 (257-302)||(3670407-3670452)
chr3 (543-577)||(3670762-3670796)
[»] chr8 (2 HSPs)
chr8 (417-540)||(39310515-39310638)
chr8 (543-577)||(42817264-42817298)
[»] chr7 (4 HSPs)
chr7 (417-539)||(43831845-43831967)
chr7 (417-540)||(43308532-43308666)
chr7 (543-577)||(43308460-43308494)
chr7 (417-453)||(43830825-43830861)
[»] chr6 (1 HSPs)
chr6 (417-540)||(15119226-15119360)
[»] chr4 (1 HSPs)
chr4 (252-298)||(40171078-40171124)
[»] chr1 (1 HSPs)
chr1 (417-454)||(21795778-21795815)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 3670601 - 3670724
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 516  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  3670601 catgtggcatgccatgtcattcgaatgagtctaagtggcgtttaagtattcatcaccgttagcccagttagcaaaaactaaccgtagggaccaaatacac 3670700  T
Q  517 taacaggcaaaaacgttgaggacc 540  Q
    |||| | |||||||||||||||||    
T  3670701 taacggacaaaaacgttgaggacc 3670724  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 3670299 - 3670380
Alignment:
Q  138 caacttcaagctctacaagtcatgtccgtaatagtttagtactcacactgatgcatcatgctgaaatttgagtgttgttgttattgagtc 227  Q
    |||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670299 caacatcaagctctacaagtcatgtccgtaata--------ctcacactgatgcatcatgctgaaatttgagtgttgttgttattgagtc 3670380  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 540
Target Start/End: Complemental strand, 19825432 - 19825357
Alignment:
Q  465 ttcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacactaacaggcaaaaacgttgaggacc 540  Q
    |||||||||||||||||| | ||||||| ||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  19825432 ttcatcaccgttagcccaatcagcaaaaattaacagtaaggaccaaatacactaacggacaaaaacgttggggacc 19825357  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 3670407 - 3670452
Alignment:
Q  257 gacttgactggtattcgtagtgaggagatggaagaaagataaggat 302  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||    
T  3670407 gacttgactggtgttcgtagtgaggagatcgaagaaagataaggat 3670452  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 577
Target Start/End: Original strand, 3670762 - 3670796
Alignment:
Q  543 aaacacgcctatttataaggaccttaaacataatt 577  Q
    ||||||| |||||||||||||||||||||||||||    
T  3670762 aaacacgtctatttataaggaccttaaacataatt 3670796  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 39310515 - 39310638
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 516  Q
    |||||||||||||||||||||| || |||||||||||| || ||  |||||||||||| || |||| | |||||||||| || | ||||||||||||||     
T  39310515 catgtggcatgccatgtcattccaacgagtctaagtggcgtccacatattcatcaccgctaacccaatcagcaaaatttgacggcagggaccaaatacat 39310614  T
Q  517 taacaggcaaaaacgttgaggacc 540  Q
    |||| | ||||||||||| |||||    
T  39310615 taactgacaaaaacgttggggacc 39310638  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 577
Target Start/End: Original strand, 42817264 - 42817298
Alignment:
Q  543 aaacacgcctatttataaggaccttaaacataatt 577  Q
    ||||||||||||||||| |||||||||||||||||    
T  42817264 aaacacgcctatttatagggaccttaaacataatt 42817298  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 539
Target Start/End: Original strand, 43831845 - 43831967
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 516  Q
    |||||||||||| ||||||||| || |||||||||||| || || ||||||||||||| || |||| | ||||||| || || | ||||||||||||||     
T  43831845 catgtggcatgcaatgtcattccaacgagtctaagtggcgtccacgtattcatcaccgctaacccaatcagcaaaaattgacggcagggaccaaatacat 43831944  T
Q  517 taacaggcaaaaacgttgaggac 539  Q
    |||| | ||||||||||| ||||    
T  43831945 taacggacaaaaacgttggggac 43831967  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 540
Target Start/End: Complemental strand, 43308666 - 43308532
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagt-----------attcatcaccgttagcccagttagcaaaatttaaccgtaggg 505  Q
    ||||||||||||||||| |||| |||||||||||||||  |||||||           |||||| |||||||||||| | ||||||| ||||| ||||||    
T  43308666 catgtggcatgccatgttattctaatgagtctaagtggcattcaagtggcgtccacgtattcattaccgttagcccaatcagcaaaaattaacggtaggg 43308567  T
Q  506 accaaatacactaacaggcaaaaacgttgaggacc 540  Q
    |  ||||||||||| ||  |||||||||| |||||    
T  43308566 atgaaatacactaatagataaaaacgttggggacc 43308532  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 577
Target Start/End: Complemental strand, 43308494 - 43308460
Alignment:
Q  543 aaacacgcctatttataaggaccttaaacataatt 577  Q
    ||||||| |||||||||||||||||||||||||||    
T  43308494 aaacacgtctatttataaggaccttaaacataatt 43308460  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 43830861 - 43830825
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtg 453  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43830861 catgtggcttgccatgtcattccaatgagtctaagtg 43830825  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 540
Target Start/End: Original strand, 15119226 - 15119360
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagt-----------attcatcaccgttagcccagttagcaaaatttaaccgtaggg 505  Q
    |||||||||||||||||||||| |||||||||||||||  | |||||           |||||| |||||||||||| ||||||||| ||| | | | ||    
T  15119226 catgtggcatgccatgtcattccaatgagtctaagtggcatccaagtggcgtccacgtattcattaccgttagcccaattagcaaaaattagcggcaagg 15119325  T
Q  506 accaaatacactaacaggcaaaaacgttgaggacc 540  Q
    || ||||||||||||||  |||||||||| |||||    
T  15119326 acgaaatacactaacagataaaaacgttggggacc 15119360  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 40171078 - 40171124
Alignment:
Q  252 ttagtgacttgactggtattcgtagtgaggagatggaagaaagataa 298  Q
    ||||||| ||||||||| || |||||||||||||||||||| |||||    
T  40171078 ttagtgagttgactggtgttggtagtgaggagatggaagaaggataa 40171124  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 21795778 - 21795815
Alignment:
Q  417 catgtggcatgccatgtcattcgaatgagtctaagtgg 454  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  21795778 catgtggcatgccatgttattctaatgagtctaagtgg 21795815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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