View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20587_low_4 (Length: 591)

Name: NF20587_low_4
Description: NF20587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20587_low_4
NF20587_low_4
[»] chr3 (5 HSPs)
chr3 (416-539)||(3670601-3670724)
chr3 (89-226)||(3670251-3670380)
chr3 (464-539)||(19825357-19825432)
chr3 (256-301)||(3670407-3670452)
chr3 (542-576)||(3670762-3670796)
[»] chr8 (2 HSPs)
chr8 (416-539)||(39310515-39310638)
chr8 (542-576)||(42817264-42817298)
[»] chr7 (4 HSPs)
chr7 (416-538)||(43831845-43831967)
chr7 (416-539)||(43308532-43308666)
chr7 (542-576)||(43308460-43308494)
chr7 (416-452)||(43830825-43830861)
[»] chr6 (1 HSPs)
chr6 (416-539)||(15119226-15119360)
[»] chr4 (1 HSPs)
chr4 (251-297)||(40171078-40171124)
[»] chr1 (1 HSPs)
chr1 (416-453)||(21795778-21795815)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 416 - 539
Target Start/End: Original strand, 3670601 - 3670724
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 515  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  3670601 catgtggcatgccatgtcattcgaatgagtctaagtggcgtttaagtattcatcaccgttagcccagttagcaaaaactaaccgtagggaccaaatacac 3670700  T
Q  516 taacaggcaaaaacgttgaggacc 539  Q
    |||| | |||||||||||||||||    
T  3670701 taacggacaaaaacgttgaggacc 3670724  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 3670251 - 3670380
Alignment:
Q  89 ttgcaagctgaagtgaaaattgaatgaaatagatctgaaacctaagaccaacatcaagctctacaagtcatgtccgtaatagtttagtactcacactgat 188  Q
    ||||||||| ||||||||||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||        |||||||||||||    
T  3670251 ttgcaagctaaagtgaaaattgaatgaaagagatctaaaacttgagaccaacatcaagctctacaagtcatgtccgtaa--------tactcacactgat 3670342  T
Q  189 gcatcatgctgaaatttgagtgttgttgttattgagtc 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3670343 gcatcatgctgaaatttgagtgttgttgttattgagtc 3670380  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 464 - 539
Target Start/End: Complemental strand, 19825432 - 19825357
Alignment:
Q  464 ttcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacactaacaggcaaaaacgttgaggacc 539  Q
    |||||||||||||||||| | ||||||| ||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  19825432 ttcatcaccgttagcccaatcagcaaaaattaacagtaaggaccaaatacactaacggacaaaaacgttggggacc 19825357  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 3670407 - 3670452
Alignment:
Q  256 gacttgactggtattcgtagtgaggagatggaagaaagataaggat 301  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||    
T  3670407 gacttgactggtgttcgtagtgaggagatcgaagaaagataaggat 3670452  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 576
Target Start/End: Original strand, 3670762 - 3670796
Alignment:
Q  542 aaacacgcctatttataaggaccttaaacataatt 576  Q
    ||||||| |||||||||||||||||||||||||||    
T  3670762 aaacacgtctatttataaggaccttaaacataatt 3670796  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 539
Target Start/End: Original strand, 39310515 - 39310638
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 515  Q
    |||||||||||||||||||||| || |||||||||||| || ||  |||||||||||| || |||| | |||||||||| || | ||||||||||||||     
T  39310515 catgtggcatgccatgtcattccaacgagtctaagtggcgtccacatattcatcaccgctaacccaatcagcaaaatttgacggcagggaccaaatacat 39310614  T
Q  516 taacaggcaaaaacgttgaggacc 539  Q
    |||| | ||||||||||| |||||    
T  39310615 taactgacaaaaacgttggggacc 39310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 576
Target Start/End: Original strand, 42817264 - 42817298
Alignment:
Q  542 aaacacgcctatttataaggaccttaaacataatt 576  Q
    ||||||||||||||||| |||||||||||||||||    
T  42817264 aaacacgcctatttatagggaccttaaacataatt 42817298  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 43831845 - 43831967
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagtattcatcaccgttagcccagttagcaaaatttaaccgtagggaccaaatacac 515  Q
    |||||||||||| ||||||||| || |||||||||||| || || ||||||||||||| || |||| | ||||||| || || | ||||||||||||||     
T  43831845 catgtggcatgcaatgtcattccaacgagtctaagtggcgtccacgtattcatcaccgctaacccaatcagcaaaaattgacggcagggaccaaatacat 43831944  T
Q  516 taacaggcaaaaacgttgaggac 538  Q
    |||| | ||||||||||| ||||    
T  43831945 taacggacaaaaacgttggggac 43831967  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 539
Target Start/End: Complemental strand, 43308666 - 43308532
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagt-----------attcatcaccgttagcccagttagcaaaatttaaccgtaggg 504  Q
    ||||||||||||||||| |||| |||||||||||||||  |||||||           |||||| |||||||||||| | ||||||| ||||| ||||||    
T  43308666 catgtggcatgccatgttattctaatgagtctaagtggcattcaagtggcgtccacgtattcattaccgttagcccaatcagcaaaaattaacggtaggg 43308567  T
Q  505 accaaatacactaacaggcaaaaacgttgaggacc 539  Q
    |  ||||||||||| ||  |||||||||| |||||    
T  43308566 atgaaatacactaatagataaaaacgttggggacc 43308532  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 43308494 - 43308460
Alignment:
Q  542 aaacacgcctatttataaggaccttaaacataatt 576  Q
    ||||||| |||||||||||||||||||||||||||    
T  43308494 aaacacgtctatttataaggaccttaaacataatt 43308460  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 452
Target Start/End: Complemental strand, 43830861 - 43830825
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtg 452  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43830861 catgtggcttgccatgtcattccaatgagtctaagtg 43830825  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 539
Target Start/End: Original strand, 15119226 - 15119360
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtggagttcaagt-----------attcatcaccgttagcccagttagcaaaatttaaccgtaggg 504  Q
    |||||||||||||||||||||| |||||||||||||||  | |||||           |||||| |||||||||||| ||||||||| ||| | | | ||    
T  15119226 catgtggcatgccatgtcattccaatgagtctaagtggcatccaagtggcgtccacgtattcattaccgttagcccaattagcaaaaattagcggcaagg 15119325  T
Q  505 accaaatacactaacaggcaaaaacgttgaggacc 539  Q
    || ||||||||||||||  |||||||||| |||||    
T  15119326 acgaaatacactaacagataaaaacgttggggacc 15119360  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 40171078 - 40171124
Alignment:
Q  251 ttagtgacttgactggtattcgtagtgaggagatggaagaaagataa 297  Q
    ||||||| ||||||||| || |||||||||||||||||||| |||||    
T  40171078 ttagtgagttgactggtgttggtagtgaggagatggaagaaggataa 40171124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 21795778 - 21795815
Alignment:
Q  416 catgtggcatgccatgtcattcgaatgagtctaagtgg 453  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  21795778 catgtggcatgccatgttattctaatgagtctaagtgg 21795815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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