View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20587_low_6 (Length: 256)
Name: NF20587_low_6
Description: NF20587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20587_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2460935 - 2461174
Alignment:
| Q |
1 |
tactaccttcatgaccactcctcttgtgttagctgcgtataagaggaaggaaagaaaatctaattacaaatacagaacaattgaaaggaaaaatgcagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460935 |
tactaccttcatgaccactcctcttgtgttagctgcgtataagaggaaggaaagaaaatctaattacaaatacagaacaattgaaaggaaaaatgcagac |
2461034 |
T |
|
| Q |
101 |
ggccaactgaggattcttgcctgttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461035 |
ggccaactgaggattcttgcctgttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcac |
2461134 |
T |
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| Q |
201 |
tttgtgtctatgcgatgcatcttaaagaattttgtgagag |
240 |
Q |
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| T |
2461135 |
tttgtgtctatgcgatgcatcttaaagaattttgtgagag |
2461174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2449919 - 2450158
Alignment:
| Q |
1 |
tactaccttcatgaccactcctcttgtgttagctgcgtataagaggaaggaaagaaaatctaattacaaatacagaacaattgaaaggaaaaatgcagac |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2449919 |
tactaccttcatgaccactccttttgtgttagctgcgtataagaggaaggaaagaaaatctaattacaaatacagaacaattgaaaggaaaaatgcagac |
2450018 |
T |
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| Q |
101 |
ggccaactgaggattcttgcctgttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcac |
200 |
Q |
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| T |
2450019 |
gggcaactaaggattcttgcctgtttccatggttcaaggaatattccatcattgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcac |
2450118 |
T |
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| Q |
201 |
tttgtgtctatgcgatgcatcttaaagaattttgtgagag |
240 |
Q |
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| T |
2450119 |
tttgtgtctatgcaatgcaccttaaagaattttgtgagag |
2450158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2445158 - 2445390
Alignment:
| Q |
1 |
tactaccttcatgaccactcctcttgtgttagctgcgtataagaggaaggaaagaaaatctaattacaaatacagaacaattgaaaggaaaaatgcagac |
100 |
Q |
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|||||| ||||||||||||||||||||| | ||||||||||||||||| | || || |||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
2445158 |
tactacattcatgaccactcctcttgtgatggctgcgtataagaggaaagcaaaaatatctgattacaaatacaaaacagttgaaaggaaaaatgcagac |
2445257 |
T |
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| Q |
101 |
ggccaactgaggattcttgcctgttttcatggttcaaggaatattccatcggtgataaacttgatcgaggcttcaagaggaatcaagaagcatgacgcac |
200 |
Q |
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|| | |||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2445258 |
agcgagttgaggattcttgcctgcttccatggtgcaaggaatattccgtcggtgataaacttgatcgaggcttcaagaggaatcaagaagcgcgacgcac |
2445357 |
T |
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| Q |
201 |
tttgtgtctatgcgatgcatcttaaagaatttt |
233 |
Q |
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||||||| ||||| ||||| ||||||||||||| |
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| T |
2445358 |
tttgtgtgtatgcaatgcaccttaaagaatttt |
2445390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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