View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20588_low_1 (Length: 674)

Name: NF20588_low_1
Description: NF20588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20588_low_1
NF20588_low_1
[»] chr3 (12 HSPs)
chr3 (368-666)||(54967210-54967508)
chr3 (368-666)||(44782524-44782822)
chr3 (380-666)||(54979854-54980140)
chr3 (367-646)||(39298725-39299002)
chr3 (367-661)||(17645701-17645982)
chr3 (368-589)||(18556305-18556523)
chr3 (461-557)||(50603225-50603318)
chr3 (172-219)||(11189187-11189234)
chr3 (175-217)||(11073623-11073665)
chr3 (367-420)||(50603351-50603404)
chr3 (176-219)||(1241991-1242035)
chr3 (368-412)||(31725198-31725242)
[»] chr8 (5 HSPs)
chr8 (366-666)||(41481517-41481817)
chr8 (368-666)||(36167516-36167813)
chr8 (373-658)||(18951129-18951410)
chr8 (172-217)||(22672964-22673009)
chr8 (182-219)||(14547504-14547543)
[»] scaffold0479 (1 HSPs)
scaffold0479 (368-666)||(2638-2936)
[»] chr4 (5 HSPs)
chr4 (368-666)||(9757212-9757511)
chr4 (385-655)||(42682854-42683118)
chr4 (397-661)||(37286912-37287174)
chr4 (175-215)||(14115999-14116039)
chr4 (368-412)||(25002905-25002947)
[»] chr7 (13 HSPs)
chr7 (1-368)||(10974926-10975297)
chr7 (368-666)||(4835575-4835871)
chr7 (368-666)||(4842648-4842946)
chr7 (368-666)||(25857131-25857426)
chr7 (368-666)||(24379279-24379576)
chr7 (461-661)||(13465050-13465247)
chr7 (368-661)||(27340935-27341222)
chr7 (367-655)||(17845763-17846052)
chr7 (488-661)||(4603584-4603755)
chr7 (367-661)||(38994059-38994332)
chr7 (367-418)||(24380113-24380164)
chr7 (176-216)||(8182153-8182193)
chr7 (172-215)||(13027874-13027918)
[»] scaffold0003 (1 HSPs)
scaffold0003 (368-666)||(342217-342513)
[»] chr6 (4 HSPs)
chr6 (367-587)||(22981494-22981711)
chr6 (367-587)||(23806697-23806914)
chr6 (367-557)||(31151925-31152105)
chr6 (3-50)||(8169555-8169602)
[»] chr2 (3 HSPs)
chr2 (382-661)||(37037838-37038112)
chr2 (176-217)||(13892017-13892058)
chr2 (176-217)||(14032142-14032183)
[»] chr5 (9 HSPs)
chr5 (461-661)||(16698403-16698599)
chr5 (366-584)||(22763812-22764029)
chr5 (368-635)||(33807965-33808213)
chr5 (368-635)||(33811619-33811867)
chr5 (368-635)||(33816537-33816785)
chr5 (367-429)||(16698609-16698671)
chr5 (175-215)||(39799714-39799754)
chr5 (175-215)||(26120721-26120761)
chr5 (176-216)||(30742135-30742175)
[»] scaffold0045 (1 HSPs)
scaffold0045 (461-655)||(26581-26771)
[»] chr1 (3 HSPs)
chr1 (421-653)||(27642033-27642261)
chr1 (172-217)||(25449428-25449473)
chr1 (177-224)||(12396964-12397011)
[»] scaffold0004 (1 HSPs)
scaffold0004 (172-217)||(210599-210644)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 54967210 - 54967508
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||  ||||||||| ||||| | |||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcactagcggaaacgtgaaataaaagcgtaatgacacaaagagaattttagc 54967309  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacc 567  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54967310 gtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacc 54967409  T
Q  568 cgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54967410 cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 54967508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 44782524 - 44782822
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| | |||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc 44782623  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44782624 gtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaa-cttccactataatgataatgggaatacaacaacttcac 44782722  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44782723 ccttaggtggatctcactacaatatatctctcaatttgcaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 44782822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 380 - 666
Target Start/End: Original strand, 54979854 - 54980140
Alignment:
Q  380 cctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtggaaaacctt 479  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| || |||||||||| ||||| | ||||||| |||||||||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcactagcggaaacgtgaaataaaagtgtaatgacacaaagagaattttagcatggaaaacctt 54979953  T
Q  480 ctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccgtaggtggatc 579  Q
    |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54979954 ctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtggatc 54980053  T
Q  580 tcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  54980054 tcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcgctatttctctcacaagaaaactctctatgaggatg 54980140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 367 - 646
Target Start/End: Complemental strand, 39299002 - 39298725
Alignment:
Q  367 ttgttgggaaatgcctgc-ataatttcccttctccgtgaactcaaaatag-gcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttt 464  Q
    ||||||||||||| || | ||||||||||| || | |||||| ||||||| ||| |||| |||||||||||||||| ||||||||||  |||| | ||||    
T  39299002 ttgttgggaaatgacttccataatttccctccttcatgaacttaaaatagcgcattagcagaaacgtgaaatataagtgtaatgacacgaagataatttt 39298903  T
Q  465 agcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 564  Q
    || ||| |||||||||||| |||||  |||| ||||| |||||||| |||| ||||||||||  |||||||||||||||||| |||||||||||||||||    
T  39298902 agtgtgaaaaaccttctcaatgtgatgaagg-aaaaatcacgggacccttgtgcctcttaaa--cttccactataatgataaagggaatacaacaacttc 39298806  T
Q  565 acccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaa 646  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39298805 acccttaggtggatctaactacaatatatctctcaatttgtaagg-acactctcacaaattggctcactatttctctcacaa 39298725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 367 - 661
Target Start/End: Complemental strand, 17645982 - 17645701
Alignment:
Q  367 ttgttgggaaatg-cctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||  | ||| | || ||||| |||||| ||| |||     |||||    
T  17645982 ttgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacactagtaggaacataaattataagtgtaatcacacaaaa----tttta 17645887  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    |||||||||||||||||| | | | |||   ||||||||||||||||||| || |||||||  ||||||||||||||||||||  |||||||||||        
T  17645886 gcgtggaaaaccttctcaatataaaaaa---aaaaaccacgggactcttgagcgtcttaaa--cttccactataatgataatgacaatacaacaac---- 17645796  T
Q  566 cccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 661  Q
     || |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    
T  17645795 -ccctaggtggatctcactacaacgtatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaaggaaactctttatga 17645701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 368 - 589
Target Start/End: Original strand, 18556305 - 18556523
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    ||||||||||  ||| |||||||| ||| |||| ||||||||||||||| || ||| ||||||||||||||||  ||||||||| | | ||  |||||||    
T  18556305 tgttgggaaacacctacataatttgcctcctccatgaactcaaaataggtaccagcagaaacgtgaaatataagcgtaatgacacataaaa--ttttagc 18556402  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| | ||||||||| ||||| ||||||||| || | ||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  18556403 gtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaa--cttccactataatgacaatgagaatacaacaacttcac 18556500  T
Q  567 ccgtaggtggatctcactacaat 589  Q
    || ||||||||||||| ||||||    
T  18556501 ccttaggtggatctcattacaat 18556523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 557
Target Start/End: Complemental strand, 50603318 - 50603225
Alignment:
Q  461 ttttagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaa 557  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||| || | | ||||||||  |||  ||||||||||| |||||||||||||||    
T  50603318 ttttagcgtggaaaaccttctcaatgtgagtaa-gaaaaaaccacggaacccgtaggcctctt--aaatctccactataataataatgggaatacaa 50603225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 11189187 - 11189234
Alignment:
Q  172 caattgaagttgagaaaaacacaagaagtgagttgaattgtgttggtt 219  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||    
T  11189187 caattgaaggtgagaaaaacacaagaagggtgttgaattgtgttggtt 11189234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 11073623 - 11073665
Alignment:
Q  175 ttgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    |||||| |||||||||||||||||| | |||||||||||||||    
T  11073623 ttgaaggtgagaaaaacacaagaagggggttgaattgtgttgg 11073665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 50603404 - 50603351
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcact 420  Q
    ||||||||||||||| | | |||||| || ||||||||||||||||||| ||||    
T  50603404 ttgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacact 50603351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 1242035 - 1241991
Alignment:
Q  176 tgaagttgagaaaaacacaagaagt-gagttgaattgtgttggtt 219  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||    
T  1242035 tgaaggtgagaaaaacacaagaagtggggttgaattgtgttggtt 1241991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 31725198 - 31725242
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaa 412  Q
    |||||||||||| ||||||||||  ||||||||||||| ||||||    
T  31725198 tgttgggaaatgtctgcataattcaccttctccgtgaattcaaaa 31725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 366 - 666
Target Start/End: Complemental strand, 41481817 - 41481517
Alignment:
Q  366 cttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| | |||||    
T  41481817 cttgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaagagaatttta 41481718  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 564  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41481717 gcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttc 41481619  T
Q  565 acccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatga 664  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41481618 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga 41481519  T
Q  665 tg 666  Q
    ||    
T  41481518 tg 41481517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 368 - 666
Target Start/End: Complemental strand, 36167813 - 36167516
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataaacgtaatgacacaaagagaattttagc 36167714  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| | ||||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36167713 gtggaaaaccttctcaatatgagaaagggaaaaaaccacgg-acccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcac 36167616  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36167615 ccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 36167516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 373 - 658
Target Start/End: Original strand, 18951129 - 18951410
Alignment:
Q  373 ggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtgga 472  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |  |||  ||||||| ||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacaca--gaa--ttttagcatgga 18951224  T
Q  473 aaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccgta 571  Q
    ||||||||||| ||||||||||||||||| ||||| |||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  18951225 aaaccttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaa-cttccactataatgataatgggaatacaacaacttcaccctta 18951323  T
Q  572 ggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctcta 658  Q
    ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  18951324 ggttgatctcactataatttatctctcaatttgtaaggaacactctcacaaattggctcattatttccctcaagagaaaactctcta 18951410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 22672964 - 22673009
Alignment:
Q  172 caattgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||    
T  22672964 caattgaaggtgagaaaaacacaagaagggggttgaattgtgttgg 22673009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 14547504 - 14547543
Alignment:
Q  182 tgagaaaaacacaagaagtg--agttgaattgtgttggtt 219  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  14547504 tgagaaaaacacaagaagtgaaagttgaattgtgttggtt 14547543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 368 - 666
Target Start/End: Complemental strand, 2936 - 2638
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||| | |||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagc 2837  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2836 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcac 2738  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2737 ccttaggtggatctcactacaatatatctctcaatttgtaaggaacgctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 2638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 9757212 - 9757511
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| | |||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaatgacacaaagagaattttagc 9757311  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaa-acttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9757312 gtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaacttcac 9757411  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  9757412 ccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcaaaagaaaactctctatgaagatg 9757511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 385 - 655
Target Start/End: Original strand, 42682854 - 42683118
Alignment:
Q  385 ataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtggaaaaccttctcag 484  Q
    ||||||||| | | ||||||||||||||||| |||||||| |||||| ||||||||| ||||||||| | |     ||| |||||||||||||||||||     
T  42682854 ataatttccttcccccgtgaactcaaaatagacactagcgaaaacgtaaaatataaacgtaatgacacataa----tttcagcgtggaaaaccttctcaa 42682949  T
Q  485 tgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccgtaggtggatctcact 584  Q
    ||||||||||| ||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42682950 tgtgagaaagg-aaaaatcacgggacccttggacctcttaaaa-cttccactataatgataatgggaatacaacaacttcacccttaggtgcatctcact 42683047  T
Q  585 acaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactct 655  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42683048 acaatatatctctcaatttgtaaggaacactcttacaaattggctcactatttctctcacaagaaaactct 42683118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 397 - 661
Target Start/End: Original strand, 37286912 - 37287174
Alignment:
Q  397 ctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtggaaaaccttctcagtgtgagaaaggg 496  Q
    |||||||| |||||||||  ||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||| ||||| ||| ||    
T  37286912 ctccgtgagctcaaaataaacactagcggaaacgtgaaatataaacgtaatgacagaaagaaaattttagcatggaaaaccttctcaatgtga-aaaagg 37287010  T
Q  497 aaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaac-ttcacccgtaggtggatctcactacaatatatct 595  Q
    ||||| |||||||| |||  || ||||  |||||||||||||||| |||||  |||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  37287011 aaaaatcacgggacccttaagcatctt--aaacttccactataataataataagaatacaacaactttcacccttagatggagctcactacaatatatct 37287108  T
Q  596 ctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 661  Q
    |||||||||||||||||| |  ||||||| |||||||| ||||||||| ||| ||| |||||||||    
T  37287109 ctcaatttgtaaggaacattaacacaaatcggctcactgtttctctcagaaggaaattctctatga 37287174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 14115999 - 14116039
Alignment:
Q  175 ttgaagttgagaaaaacacaagaagtgagttgaattgtgtt 215  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  14115999 ttgaaggtgagaaaaacacaagaagggggttgaattgtgtt 14116039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 25002905 - 25002947
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaa 412  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  25002905 tgttgggaaatgc-tgcataatttccct-ctccgtgaactcaaaa 25002947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 10975297 - 10974926
Alignment:
Q  1 tctggaatttacaatatgcagctcaagtccaagcctcagcagatgcagattctattatatcctagctccctttattgcaattataaatgtat----agtt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  10975297 tctggaatttacaatatgcagctcaagtccaagcctcagcagatgcagattctattatatcctagctccctttattgcaattataaatgtatgtatagtt 10975198  T
Q  97 gttgtatgtaaattttccctcattttcatgtttattctagagtttgatagaaaagatctagctaggattcggatacaattgaagttgagaaaaacacaag 196  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10975197 gttgtatgtaaattttccctcattttcatgtttattatggagtttgatagaaaagatctagctaggattcggatataattgaagttgagaaaaacacaag 10975098  T
Q  197 aagtgagttgaattgtgttggttgttttaaacnnnnnnnaaatgattttatagttcggagtctaaatgcaacagataaaataaacacnnnnnnnnnnnnn 296  Q
    || |||||||||||||||||||| ||||||||       |||||||||||||||||  |||||||||||||||||||||||||||||                 
T  10975097 aactgagttgaattgtgttggtttttttaaactttttttaaatgattttatagttcatagtctaaatgcaacagataaaataaacacagagaaagagata 10974998  T
Q  297 nnnnnnnnaggcagatacagacaattatacttgtttcgcatacaatcaggagtagtcaagtcccttgcactt 368  Q
            ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10974997 gagagagaaggcagacacaaacaattatacttgtttcgcatataatcaggagtagtcaagtcccttgcactt 10974926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 4835575 - 4835871
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||  |||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcactagtggaaacgtgaaatataaacgtaatgacacagagaa--ttttagc 4835672  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatgcaacaacttcac 4835771  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4835772 ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 4835871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 4842648 - 4842946
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagtgtaatgacacaaagagaattttagc 4842747  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    |||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4842748 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaa-cttccactataatgataataggaatacaacaacttcac 4842846  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  4842847 ccttaggtggatctcactacaatatatctctcaatttttaaggaacactctcacaaattggctcaatatttctctcacaagaaaactctttatgaggatg 4842946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 25857131 - 25857426
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| | ||||  |||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcactagcggaaacgtgaaatataagcgtaatgacacagagaa--ttttagc 25857228  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacc 567  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25857229 gtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaacttcacc 25857327  T
Q  568 cgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
      |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25857328 tttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 25857426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 24379279 - 24379576
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||| ||||| || ||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||| ||| | ||||| |    
T  24379279 tgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcactagtggaaacgtaaaatataaacgtaatgacatagagataattttaac 24379378  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacc 567  Q
    |||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24379379 gtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaa-cttccactataatgataataggaatacaacaacttcacc 24379477  T
Q  568 cgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24379478 cttaggtggatctccctacaatatatctctcaatttgtaaggaacactctcataaattggctcactatttctttcacaagaaaactctctatgaggatg 24379576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 461 - 661
Target Start/End: Original strand, 13465050 - 13465247
Alignment:
Q  461 ttttagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaa 560  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  13465050 ttttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaa-catccactataatgataatgggaatacaacaa 13465148  T
Q  561 cttcacccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatg 660  Q
     |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||  ||||||    
T  13465149 gttcaccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcactatt--tctcacaagaaaacattctatg 13465246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 368 - 661
Target Start/End: Original strand, 27340935 - 27341222
Alignment:
Q  368 tgttgggaaatg-cctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttag 466  Q
    |||||||||||  ||| ||||||||||||  |  ||||||||||||||||||||||||||||| ||||||||||  ||||||||| | ||||  ||||||    
T  27340935 tgttgggaaataacctccataatttccctcttttgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgacacagagaa--ttttag 27341032  T
Q  467 cgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||| ||||  |||||||||  |||| |||| ||||||||||| ||||||| |||||| |    
T  27341033 cgtggaaaaccttctcaatgtaagaaagg-aaaaaccacgggacccttgtacctcttaaa--cttctactacaatgataatggaaatacaataacttctc 27341129  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 661  Q
       ||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||| |||||    
T  27341130 t--tagatggatctcactacaatatatctctcaatttgtaaggaacactctcacaggttggctcactatttctctcacaaagaaactctatatga 27341222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 367 - 655
Target Start/End: Complemental strand, 17846052 - 17845763
Alignment:
Q  367 ttgttgggaaatgcctgc-ataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    ||||||||||||| || | ||||||| ||| ||||||||||| ||||| |||| |||  |||| |||||||||||  |||| |||| || || | |||||    
T  17846052 ttgttgggaaatgacttccataattttcctcctccgtgaacttaaaattggcattaggagaaatgtgaaatataagcgtaaagacacaa-gagaatttta 17845954  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    | ||||||||||||| || |||||| |||| ||||||||| ||||  |||| |||||||||  ||||||||||||||||||||| |||||||||||||||    
T  17845953 gagtggaaaaccttcccaatgtgaggaagg-aaaaaccacaggacctttggacctcttaaa--cttccactataatgataatggaaatacaacaacttca 17845857  T
Q  566 cccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctca----caaattggctcactatttctctcacaagaaaactct 655  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||     |||||| |||| ||||||||||||||| |||||||    
T  17845856 cccttaggtgaatctcactacaatatatctctcaatttgtaaggaacactctcataattaaattgactcaatatttctctcacaaggaaactct 17845763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 488 - 661
Target Start/End: Complemental strand, 4603755 - 4603584
Alignment:
Q  488 gagaaagggaaaaa-ccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccgtaggtggatctcactac 586  Q
    |||||||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  4603755 gagaaagggaaaaaaccacgggacctttgggcctcttaaac-cttccactataatgataatggaaatacaacaactttacccttaggtggatctcactac 4603657  T
Q  587 aatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 661  Q
    ||||||||| |||||||||||||||||  || |||||||||||| |||||||||||||||||||||||| |||||    
T  4603656 aatatatctttcaatttgtaaggaaca--cttacaaattggctctctatttctctcacaagaaaactctttatga 4603584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 367 - 661
Target Start/End: Original strand, 38994059 - 38994332
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttag 466  Q
    |||||||||||| | |||||||||||  |  ||| |||||| ||||||| |||   ||||||| ||||||||||||||||||||| ||||| | |||||     
T  38994059 ttgttgggaaatacatgcataatttctatcatccatgaacttaaaatagacaccgacggaaacatgaaatataaatgtaatgacacaaagagaattttaa 38994158  T
Q  467 cgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || | ||||||||||| ||| || ||||||||||                         
T  38994159 cgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaaa-ctttcattataatgata--------------------- 38994236  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaa-gaaaactctctatga 661  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  38994237 ccttaggtggatctcactacaatatatctctcaatttgtaaggaacactatcacaaattggctcattatttctctcacaaggaaaactctctatga 38994332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 24380164 - 24380113
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggca 418  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24380164 ttgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 8182153 - 8182193
Alignment:
Q  176 tgaagttgagaaaaacacaagaagtgagttgaattgtgttg 216  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  8182153 tgaaggtgagaaaaacacaagaagggggttgaattgtgttg 8182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 13027918 - 13027874
Alignment:
Q  172 caattgaagttgagaaaaacacaagaagtga-gttgaattgtgtt 215  Q
    ||||||||| |||||||||||||||||| || |||||||||||||    
T  13027918 caattgaaggtgagaaaaacacaagaagggaggttgaattgtgtt 13027874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 368 - 666
Target Start/End: Original strand, 342217 - 342513
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagc 467  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||  |||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcactagcagaaacgtgaaatataagcgtaatgacacaaagaa--ttttagc 342314  T
Q  468 gtggaaaaccttctcagtgtgagaaagggaa-aaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    ||| |||||||||||| | ||||||| |||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  342315 gtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaa-cttccactataatgataatgggaatacaacaatttcac 342413  T
Q  567 ccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgatgatg 666  Q
    || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  342414 ccttaggtgtatctgactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatg 342513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 6e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 367 - 587
Target Start/End: Complemental strand, 22981711 - 22981494
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttag 466  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||  ||||||||| | ||||  ||||||    
T  22981711 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacacagagaa--ttttag 22981614  T
Q  467 cgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22981613 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctctt-aaaacttccactataatgataatgggaatacaacaacttcac 22981515  T
Q  567 ccgtaggtggatctcactaca 587  Q
    || ||||||||| ||||||||    
T  22981514 ccttaggtggatttcactaca 22981494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 367 - 587
Target Start/End: Original strand, 23806697 - 23806914
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttag 466  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||  ||||||||| | ||||  ||||||    
T  23806697 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgacacagagaa--ttttag 23806794  T
Q  467 cgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcac 566  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23806795 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctctt-aaaacttccactataatgataatgggaatacaacaacttcac 23806893  T
Q  567 ccgtaggtggatctcactaca 587  Q
    || ||||||||| ||||||||    
T  23806894 ccttaggtggatttcactaca 23806914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 367 - 557
Target Start/End: Original strand, 31151925 - 31152105
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaatgtaatgacata-aagaaagttt 463  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||||||||||  ||||||||||       ||||    ||||||| | || ||| |||    
T  31151925 ttgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaac-------ataa----aatgacacacaacaaaattt 31152013  T
Q  464 tagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaa 557  Q
    ||  |||||||||||||||| |||||| |||  |||||||||||||  | | ||||||||  |||  ||||||||||| |||||||||||||||    
T  31152014 taatgtggaaaaccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctctt--aaatctccactataataataatgggaatacaa 31152105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 8169555 - 8169602
Alignment:
Q  3 tggaatttacaatatgcagctcaagtccaagcctcagcagatgcagat 50  Q
    ||||| |||||||||||||||||||| |||||| || |||||||||||    
T  8169555 tggaacttacaatatgcagctcaagttcaagccacatcagatgcagat 8169602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 9e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 382 - 661
Target Start/End: Complemental strand, 37038112 - 37037838
Alignment:
Q  382 tgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtggaaaaccttct 481  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||| |||||| |    |||| |||| | |||   |||||||| ||||||||||||    
T  37038112 tgcataatttctctcctccgtgaactcaaaataggcactagcgaaaacctgaaatctttgcgtaaagacacatagat--ttttagcgaggaaaaccttct 37038015  T
Q  482 cagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccgtaggtggatctc 581  Q
    || ||||||||||| | |||||||||||| |||||||||||||||  ||| |||||||| ||||||| ||||||||||||||||| | ||||||||||||    
T  37038014 caatgtgagaaagg-agaaaccacgggacccttgggcctcttaaa--ctttcactataacgataatgagaatacaacaacttcactcttaggtggatctc 37037918  T
Q  582 actacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 661  Q
    | |||||| |  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37037917 attacaatctgactctcaatttataagaaacactctcacaaattggctcactatttctctcacaagaaaactctctatga 37037838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 13892017 - 13892058
Alignment:
Q  176 tgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  13892017 tgaagttgataaaaacacaagaagggggttgaattgtgttgg 13892058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 14032142 - 14032183
Alignment:
Q  176 tgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  14032142 tgaagttgataaaaacacaagaagggggttgaattgtgttgg 14032183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 461 - 661
Target Start/End: Complemental strand, 16698599 - 16698403
Alignment:
Q  461 ttttagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaa 560  Q
    |||||| ||||||| |||||||| |||||||||||||||||  | ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||      
T  16698599 ttttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaa-cttccactataatgataatgggaatacaac-- 16698503  T
Q  561 cttcacccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatg 660  Q
     ||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| || ||||||||| |||||||||||||||||||    
T  16698502 -ttcacccttatgtggatctcactacaatgtatctctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaactctctatg 16698404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 366 - 584
Target Start/End: Original strand, 22763812 - 22764029
Alignment:
Q  366 cttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    |||||||||||||| | ||||||||| | | ||| | ||| | ||||||||||||||| ||||||||||||||||  ||||||| | ||||| | |||||    
T  22763812 cttgttgggaaatgtcagcataattttcttcctcggagaatttaaaataggcactagcagaaacgtgaaatataagcgtaatgatacaaagagaatttta 22763911  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    || ||||||||||||||| | ||||||||||||||||||||||||  ||||||||||| |||||||   |||||||||||||||||||||||||||||||    
T  22763912 gcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctctt-aaaacttatgctataatgataatgggaatacaacaacttca 22764010  T
Q  566 cccgtaggtggatctcact 584  Q
    | | |||||| ||||||||    
T  22764011 ctcttaggtgaatctcact 22764029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 368 - 635
Target Start/End: Complemental strand, 33808213 - 33807965
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |           |||||||  || ||| |||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgaca-caacaaaatttta 33808126  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    |||||||||||||||||| |||||| || |||||||||||||||| | | ||||||||  |||  ||||||||||| ||||||||||||||| | |||||    
T  33808125 gcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttca 33808030  T
Q  566 cccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 635  Q
    |||  ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  33808029 ccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 33807965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 368 - 635
Target Start/End: Complemental strand, 33811867 - 33811619
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |           |||||||  || ||| |||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgaca-caacaaaatttta 33811780  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    |||||||||||||||||| |||||| || |||||||||||||||| | | ||||||||  |||  ||||||||||| ||||||||||||||| | |||||    
T  33811779 gcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttca 33811684  T
Q  566 cccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 635  Q
    |||  ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  33811683 ccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 33811619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 368 - 635
Target Start/End: Complemental strand, 33816785 - 33816537
Alignment:
Q  368 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaatgtaatgacataaagaaagtttta 465  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |           |||||||  || ||| |||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgaca-caacaaaatttta 33816698  T
Q  466 gcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttca 565  Q
    |||||||||||||||||| |||||| || |||||||||||||||| | | ||||||||  |||  ||||||||||| ||||||||||||||| | |||||    
T  33816697 gcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttca 33816602  T
Q  566 cccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 635  Q
    |||  ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  33816601 ccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 33816537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 16698671 - 16698609
Alignment:
Q  367 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaac 429  Q
    ||||||||||||   |||||||||||| | ||||||||||||| |||||||||||||||||||    
T  16698671 ttgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcactagcggaaac 16698609  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 39799754 - 39799714
Alignment:
Q  175 ttgaagttgagaaaaacacaagaagtgagttgaattgtgtt 215  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  39799754 ttgaaggtgagaaaaacacaagaagggagttgaattgtgtt 39799714  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 26120761 - 26120721
Alignment:
Q  175 ttgaagttgagaaaaacacaagaagtgagttgaattgtgtt 215  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  26120761 ttgaaggtgagaaaaacacaagaagggggttgaattgtgtt 26120721  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 30742135 - 30742175
Alignment:
Q  176 tgaagttgagaaaaacacaagaagtgagttgaattgtgttg 216  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  30742135 tgaaggtgagaaaaacacaagaagggggttgaattgtgttg 30742175  T

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Target: scaffold0045 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 461 - 655
Target Start/End: Original strand, 26581 - 26771
Alignment:
Q  461 ttttagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcctcttaaaaacttccactataatgataatgggaatacaacaa 560  Q
    |||||| |||||||||||| ||| |||||| |||| |||||| ||||||| |||||||||||||||  |||||||| ||||||||| | ||||||||| |    
T  26581 ttttagggtggaaaaccttttcaatgtgagtaagg-aaaaactacgggacccttgggcctcttaaa--cttccactctaatgataacgagaatacaacta 26677  T
Q  561 cttcacccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactct 655  Q
    || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  26678 ctccacccttaggtggatctcactacaatttatctctcaatttgtaaggaacactctcacaaattggctcactattt-tctcacaaaaaaactct 26771  T

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Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 421 - 653
Target Start/End: Complemental strand, 27642261 - 27642033
Alignment:
Q  421 agcggaaacgtgaaatataaatgtaatgacataaagaaagttttagcgtggaaaaccttctcagtgtgagaaagggaaaaaccacgggactcttgggcct 520  Q
    ||||||||||||||||||||  ||||||| | || |||  |||| ||||| |||||||||||| ||||||||||| ||||| ||||||   || ||| ||    
T  27642261 agcggaaacgtgaaatataagcgtaatgatacaaggaa--ttttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtct 27642164  T
Q  521 cttaaaaacttccactataatgataatgggaatacaacaacttcacccgtaggtggatctcactacaatatatctctcaatttgtaaggaacactctcac 620  Q
    ||||||  ||||||||||||| |||||||||||| |||||||||| |  || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  27642163 cttaaa--cttccactataataataatgggaataaaacaacttcatctttaagtggatctcactacaatatatctctctatttgtaaggaacactctcac 27642066  T
Q  621 aaattggctcactatttctctcacaagaaaact 653  Q
    |||||| ||  |||||||||||| ||| |||||    
T  27642065 aaattgacttcctatttctctcaaaaggaaact 27642033  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 25449473 - 25449428
Alignment:
Q  172 caattgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||    
T  25449473 caattgaaggtgagaaaaacacaagaagggggttgaattgtgttgg 25449428  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 12396964 - 12397011
Alignment:
Q  177 gaagttgagaaaaacacaagaagtgagttgaattgtgttggttgtttt 224  Q
    |||| ||||||||||||||||||  |||||||||||||||||| ||||    
T  12396964 gaaggtgagaaaaacacaagaagatagttgaattgtgttggttttttt 12397011  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 210599 - 210644
Alignment:
Q  172 caattgaagttgagaaaaacacaagaagtgagttgaattgtgttgg 217  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||    
T  210599 caattgaaggtgagaaaaacacaagaagggggttgaattgtgttgg 210644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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