View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20588_low_2 (Length: 286)
Name: NF20588_low_2
Description: NF20588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20588_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 31302180 - 31302333
Alignment:
| Q |
20 |
gtttaattctggtaaacaaaa--tttacgaattctaaaccaaaccaaactgataaataacgagttggtttgttttggttcatcggattgacatttttaaa |
117 |
Q |
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| T |
31302180 |
gtttaattctggtaaacaaaaaatttacgaattctaaaccaaaccaaactgataaataacgagttggtttgttttggttcatcggattgacatttttaaa |
31302279 |
T |
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| Q |
118 |
catttgaaaaacttatttcaaaaaatctagaaaataattaacttttaatcaaac |
171 |
Q |
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| T |
31302280 |
catttgaaaaacttatttcaaaaaatctaaaaaataattaacttttaatcaaac |
31302333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 31302401 - 31302432
Alignment:
| Q |
239 |
gagtaaaagaatacacgaacacaacataattt |
270 |
Q |
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| T |
31302401 |
gagtaaaagaatacacgaacacaacataattt |
31302432 |
T |
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