View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_high_1 (Length: 701)
Name: NF20589_high_1
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 228 - 683
Target Start/End: Complemental strand, 56230312 - 56229856
Alignment:
| Q |
228 |
tgattcacaaactttgacatgaaattgcacaataaaatactatatggttaacaatgttcaaataaatatttgattagttacaatgttatctattaattaa |
327 |
Q |
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| T |
56230312 |
tgattcacaaactttgacataaaattgcacaataaaatactatatggttaacaatgttcaaataaatatttgattagtcacaatgttatctattaattaa |
56230213 |
T |
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| Q |
328 |
gnnnnnnnttaagaaggcttttgaactaattataaccccatgcttttcatgtttatattgtgactaatgactatatgtgnnnnnnnnnnaa-cacgctaa |
426 |
Q |
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| T |
56230212 |
gaaaaaaattaagaaggcttttgaactaattataaccc-atgattttcatgtttatattgtgactaatgaatatatgtgttttttttttaaacacactaa |
56230114 |
T |
|
| Q |
427 |
aatgaaacttatattaaacaacaaaagatgcgcctcttagcacaaagtatgtgtcaaagaagatcaacaaggtttaaatacaaaactccatcaccaataa |
526 |
Q |
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| T |
56230113 |
aatgaaacttatattaaacaacaaaagatgcgcctcttaacacaaagtatgtgtcaaggaagatcaacaaagtttaaatacaaaactccatcaccaataa |
56230014 |
T |
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| Q |
527 |
caagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaagtatctattttatttta-gaaatttgacctagtat |
625 |
Q |
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| T |
56230013 |
caagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaattatctattttattttatgaaatttgacgtagtat |
56229914 |
T |
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| Q |
626 |
atgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagatac |
683 |
Q |
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| T |
56229913 |
atgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagatac |
56229856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 43277076 - 43277035
Alignment:
| Q |
425 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttag |
466 |
Q |
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| T |
43277076 |
aaaatgaaacttatattaaacgacaaaagatgctcctcttag |
43277035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 39188111 - 39188072
Alignment:
| Q |
16 |
atgcaagagaaatactactaactagtatgaatattgaatc |
55 |
Q |
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| T |
39188111 |
atgcaagggaaatactactaactattatgaatattgaatc |
39188072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 7125648 - 7125694
Alignment:
| Q |
425 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttagcacaa |
471 |
Q |
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||||||||||||||||||||| | ||||||||| ||||| ||||||| |
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| T |
7125648 |
aaaatgaaacttatattaaacgataaaagatgctcctctcagcacaa |
7125694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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