View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20589_high_12 (Length: 315)

Name: NF20589_high_12
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20589_high_12
NF20589_high_12
[»] chr3 (1 HSPs)
chr3 (9-298)||(25256340-25256626)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 25256340 - 25256626
Alignment:
Q  9 agcagagaagcaaagaataacaataacccatctcttaggaaaaacttcccaccaaggtgaagactcagtcacttcttcctcaacagcaacagcatccaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  25256340 agcagagaagcaaagaataacaataacccatctcttaggaaaaacttcccaccaagatgaagactcagtcacttcttcctcaacatcaacaccatccaaa 25256439  T
Q  109 ccacttactactttcttatgaactgcaagatcttgatacttacttgaggcttctggcccatgtttctcagacttaacatctgcccacaccttccctcttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25256440 ccacttactactttcttatgaactgcaagatcttgatacttacttgaggcttctggcccatgtttctcagacttaacatctgcccacaccttccctcttc 25256539  T
Q  209 ccctccggtgagacagcagcaggtgcaatggaaacggagaaggtgaatggttaaagagagttctggtacgtgattgtggtgaagaagaag 298  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25256540 ccctccggtgaca---cagcaggtgcaatggaaacggataaggtgaatggttaaagagagttctggtacgtgattgtggtgaagaagaag 25256626  T

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