View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20589_high_2 (Length: 525)
Name: NF20589_high_2
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 252 - 507
Target Start/End: Complemental strand, 54181957 - 54181707
Alignment:
| Q |
252 |
aggaaatgttaattaaaagttaatatttttatatttgcactaacatatttgcaattaaaaaaaattatgtatccatattcgcaatttnnnnnnnnnnnnn |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54181957 |
aggaaatgttaattaaaagttaatatttttatatttgtactaacatatttgcaattaaaaaaaattatgtatccatattcgcaatttaaaaaaaaaaaaa |
54181858 |
T |
|
| Q |
352 |
nnnnntcatatatcaatataatgcatgcactcatgttcgtatcaatgtaaatgcaatcattttaagtatccattcaaagtgattagcgaaaatcactttt |
451 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54181857 |
-----tcatatatccatataatgcatgcactcatgttcgtatcaatgtaaatgcaatcattttaagtatccattcaaagtgattagcgaaaatcactttt |
54181763 |
T |
|
| Q |
452 |
gacttttcaggactgagacaagaaattgcgaagaatacgtgcaccaaggtaaataa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54181762 |
gacttttcaggactgagacaagaaattgcgaagaatacgtgcaccaaggtaaataa |
54181707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 54182119 - 54182069
Alignment:
| Q |
92 |
gtaatacatttaattagaaaataagttgatcccaatacttatttcttcttc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54182119 |
gtaatacatttaattagaaaataagttgatcccaatacttatttcttcttc |
54182069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University