View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_high_5 (Length: 428)
Name: NF20589_high_5
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 38021147 - 38021355
Alignment:
| Q |
13 |
tcatcacctgctgcttttttacaacaaacaatggttttaggcattttgctcaca--ttccaaacagtggttccgtacagtcctaaacgattctataacta |
110 |
Q |
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| T |
38021147 |
tcatcacctgctgggtttttacaacaaacaatggttttaggcactttgctcacacattccaaaccgtggttccgtacagtcctaaacgattctataacta |
38021246 |
T |
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| Q |
111 |
caacattataattttgtcacttac----------atgagcacctagtgcaatttgcatggtcctacaattacaaatcaagtctaaatgtagggattgata |
200 |
Q |
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| T |
38021247 |
caacattataattttgtcacttacatgagcaacaatgagcacctagtgcaatttgcatggtcctacaattacaaatcaagtctaaatgtagggattgata |
38021346 |
T |
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| Q |
201 |
tattttatt |
209 |
Q |
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||||||||| |
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| T |
38021347 |
tattttatt |
38021355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 201 - 428
Target Start/End: Original strand, 38021539 - 38021769
Alignment:
| Q |
201 |
tattttattagatataccctatctatttcaatttagctaa----cgacaaaaataacc-acaaaacaaaaaccatgttccccnnnnnnnattt-cccacc |
294 |
Q |
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| T |
38021539 |
tattttattagata--ccctatctatttcaattcagctaattaacgacaaaaataacccacaaaacaaaaaccatgttcccctttttttattttcccacc |
38021636 |
T |
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| Q |
295 |
cacacgcactccacacagcatctggttttcctcccaaactaaattattgtcactttttctatcccaacactatatat--taacactactaccttagccta |
392 |
Q |
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| T |
38021637 |
cacacgcactccacacagcatctggttttcctcccaaactaaattattgtcactttttctatcccaacactatatatattaacactacaaccttagccta |
38021736 |
T |
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| Q |
393 |
ttttctacatcactactactactacctcatcaacca |
428 |
Q |
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| T |
38021737 |
ttttctacatcacta---ctactacctcatcaacca |
38021769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 38030494 - 38030556
Alignment:
| Q |
147 |
tgcaatttgcatggtcctacaattacaaatcaagtctaaatgtagggattgatatattttatt |
209 |
Q |
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| T |
38030494 |
tgcaatttgcatggtcctacaattacaaatcaaatccaaatgcagggattaatatattttatt |
38030556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 38030408 - 38030487
Alignment:
| Q |
13 |
tcatcacctgctgcttttttacaacaaacaatggttttaggcattttgctcaca--ttccaaacagtggttccgtacagt |
90 |
Q |
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||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||| |
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| T |
38030408 |
tcatcacctgctggtttttaacaacaaacaatggtttcaggcattttactcacacgttccaaaccatggttccgtacagt |
38030487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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