View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_low_14 (Length: 311)
Name: NF20589_low_14
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_14 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2593050 - 2592762
Alignment:
| Q |
1 |
atctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagatagagcaaaaattatacttagttgaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| | ||||| |||| | || |
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| T |
2593050 |
atctccctaactccgcttattttctaggtgggagccatggttttattcatata------gatatagagatagatagaccaaagaatatacatagtagcaa |
2592957 |
T |
|
| Q |
101 |
aaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatgaaat |
200 |
Q |
| |
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|| ||||||||||| ||||||||||||| ||||||| |||| |||||||||||| |||||||||| || |||||||||||||||||| ||||||||||| |
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| T |
2592956 |
aa-ggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaattttgatgattatagaaatgaaaa |
2592858 |
T |
|
| Q |
201 |
ttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacct----attaccacaacaactacatcatcaac |
292 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
2592857 |
ttttaggaagctaagttgaaaccaatttccttgaacctcttctcagttttcttttcaatttcgcctattaattactacaacaactacatcatcaac |
2592762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 2624578 - 2624311
Alignment:
| Q |
1 |
atctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatat-----agagatagatagagcaaaaattatacttagt |
95 |
Q |
| |
|
|||||| ||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||| ||| ||||||| |||| |
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| T |
2624578 |
atctccttaactccactttttttttaggtgggagtcatggttttattcatatatgatatgatatgatatagagaaatatagaataaagattatacatagt |
2624479 |
T |
|
| Q |
96 |
tgaaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaat |
195 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2624478 |
agagaaaaggatttaactatattacaatataaacatatagtaattagcatataaattgtgttatgttagaaaaacctacaattttgatgattgtagaaat |
2624379 |
T |
|
| Q |
196 |
gaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacc |
265 |
Q |
| |
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| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
2624378 |
g--attttttggaagctaaggtgaaaccaatttctctgaacttcttctcaattttcttttcaatttcacc |
2624311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2635024 - 2634879
Alignment:
| Q |
1 |
atctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagatagagcaaaaattatacttagttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2635024 |
atctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagatagagcaaaaattatacttagttgaaa |
2634925 |
T |
|
| Q |
101 |
aaaggatttaactatattacaatataacgatatagtaattagcata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2634924 |
aaaggatttaactatattacaatataacgatatagtaattagcata |
2634879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 118 - 289
Target Start/End: Original strand, 2568334 - 2568503
Alignment:
| Q |
118 |
tacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggt |
217 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
2568334 |
tacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttagaagctaaggg |
2568433 |
T |
|
| Q |
218 |
gaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatc |
289 |
Q |
| |
|
||||||||||| | |||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||||| |
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|
| T |
2568434 |
acaaccaatttccgtaaacctc--ctcaattttattttcaatttcacctgttatcacaacaagtacatcatc |
2568503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 2624722 - 2624631
Alignment:
| Q |
156 |
ttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaat |
247 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624722 |
ttatgttagaaaagcctacaattttcataattgtagaaatgaaatttttaggaagctaaggtgaaaccaatttccctgaacctcttctcaat |
2624631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 2671688 - 2671846
Alignment:
| Q |
98 |
aaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatga |
197 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||| || |||||||||||||||||| | |||| |
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|
| T |
2671688 |
aaaaaaagatgtaactatattacaatagaacc-----gtaattaacataggaattgtgctatgtttgaaaaaccaacaattttgatgattgtacagatga |
2671782 |
T |
|
| Q |
198 |
aatttttaagaagct-aaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatt |
260 |
Q |
| |
|
|| ||| |||||| |||| | || |||| ||| | ||||||||||||||||||||||||||| |
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|
| T |
2671783 |
aaacttttggaagctaaaggagcaaacaatctccttaaacctcttctcaattttcttttcaatt |
2671846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 2595962 - 2596043
Alignment:
| Q |
192 |
aaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattacca |
273 |
Q |
| |
|
||||||||||||| |||||||| | || | ||||| ||| |||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
2595962 |
aaatgaaatttttcggaagctaaaggaaatctaattttcctaaacctcttctcatttttcttttcaattttacctattacca |
2596043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 2440872 - 2440818
Alignment:
| Q |
236 |
cctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatcaa |
291 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||| |
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|
| T |
2440872 |
cctcttctcatttttctttt-aatttcacatattaccacaacaactccatcatcaa |
2440818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4985 - 5130
Alignment:
| Q |
1 |
atctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagatagagcaaaaattatacttagttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4985 |
atctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagatagagcaaaaattatacttagttgaaa |
5084 |
T |
|
| Q |
101 |
aaaggatttaactatattacaatataacgatatagtaattagcata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5085 |
aaaggatttaactatattacaatataacgatatagtaattagcata |
5130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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