View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20589_low_17 (Length: 272)
Name: NF20589_low_17
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 44957316 - 44957073
Alignment:
| Q |
13 |
aatatggaagcaagataatataaggggatttttccgaggtaatggattgaatgttgtgaaggtatcaccagaaagtgcaattaaattctatgcttttgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44957316 |
aatatggaagcaagataatataaggggatttttccgaggtaatggattgaatgttgtgaaggtatcaccagaaagtgcaatcaaattctatgcttttgaa |
44957217 |
T |
|
| Q |
113 |
atgttgaaaaaagtaattggagaggctcaagggaacaattcggatattggtgctgctgggaggcttttagcaggtggcgtggctggtggaattgcgcaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44957216 |
atgttgaaaaaagtaattggagaggctcaagggaacaattcggatattggtgctgctgggaggcttttagcaggtggcgtggctggtggaattgcgcaga |
44957117 |
T |
|
| Q |
213 |
ccgcaatttatcctatggaccttatcaaaactaggctacaaact |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44957116 |
ccgcaatttatcctatggaccttatcaaaactaggctacaaact |
44957073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 40063228 - 40063017
Alignment:
| Q |
41 |
tttttccgaggtaatggattgaatgttgtgaaggtatcaccagaaagtgcaattaaattctatgcttttgaaatgttgaaaaaagtaattggagaggctc |
140 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| || || || || || || ||||||| ||||||| ||||||| ||||||||||| | |
|
|
| T |
40063228 |
tttttccgaggtaatgggttgaatgttgtgaaggttgcacctgagagcgccatcaagttttatgcttatgaaatgctgaaaaatgtaattggagataggc |
40063129 |
T |
|
| Q |
141 |
aagggaacaattcggatattggtgctgctgggaggcttttagcaggtggcgtggctggtggaattgcgcagaccgcaatttatcctatggaccttatcaa |
240 |
Q |
| |
|
|||||||||| || ||||||||| ||||||| || ||||| ||||||||| ||||||||| ||||| |||| || || ||||| |||| |||||||| |
|
|
| T |
40063128 |
aagggaacaagtcagatattggtactgctggaagactttttgcaggtggcatggctggtgccattgcacagattgctatctatccattggatcttatcaa |
40063029 |
T |
|
| Q |
241 |
aactaggctaca |
252 |
Q |
| |
|
||||||| |||| |
|
|
| T |
40063028 |
aactaggttaca |
40063017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University