View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_low_18 (Length: 269)
Name: NF20589_low_18
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 38346451 - 38346199
Alignment:
| Q |
17 |
tgatcacataataacacagttgttattggcatcatcatcatagtagtgttggatttgttgatgttgcatttgttctgaagcagatggtgcatgtggtgct |
116 |
Q |
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| T |
38346451 |
tgatcacataataacacagttgttattggcatcatcatcatagtagtgttggatttgttgatgttgcatttgttctgaagcagatggtgcatgtggtgct |
38346352 |
T |
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| Q |
117 |
aaaacaccattgtattggtaaggatcagaatgactttgattatgattgtagtaaggtaccacatttccatgtctaccgtcatattcattgtatccatacc |
216 |
Q |
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| T |
38346351 |
aaaacaccattgtattggtaaggatcagaatgactttgattatgattgtagtaaggtaccacatttccatgtctaccgtcatattcattgtatccatacc |
38346252 |
T |
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| Q |
217 |
catatctgctaccgtggttgccattataatggtatgcatgaccatgattgcca |
269 |
Q |
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| T |
38346251 |
catatctgctaccgtggttgccattataatggtatgcatgaccatgattgcca |
38346199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 45043361 - 45043493
Alignment:
| Q |
53 |
atcatagtagtgttggatttgttgatgttgcatttgttctgaagcagatggtgcatgtggtgctaaaacaccattgtattggtaaggatcagaatgactt |
152 |
Q |
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| T |
45043361 |
atcattgtagtgttggagttgttgatgttgcaattgttctgatgcagatggtggaggcagtgctaaaataccattggatgggtaagggtcagattgatat |
45043460 |
T |
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| Q |
153 |
tgattatgattgtagtaaggtaccacatttcca |
185 |
Q |
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| T |
45043461 |
tgaatatgattatagctaggtaccacatttcca |
45043493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 45043492 - 45043600
Alignment:
| Q |
97 |
cagatggtgcatgtggtgctaaaacaccattgtattggtaaggatcagaatgactttgattatgattgtagtaaggtaccacatttccatgtctaccgtc |
196 |
Q |
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| T |
45043492 |
cagatggtgcaggtagtgcgaaaacatcgttggatcggtaacggtcagattgatattgaatacggttatagctaggtaccacatttccatgtccaccgtt |
45043591 |
T |
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| Q |
197 |
atattcatt |
205 |
Q |
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| T |
45043592 |
atattcatt |
45043600 |
T |
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