View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_low_20 (Length: 238)
Name: NF20589_low_20
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 38345996 - 38345830
Alignment:
| Q |
1 |
tcccagctttctttatttccgtcaaaagcttgattggatctattgcaccagaaattcgaataataccatgtgttgcatcaatgttgaatgatacatctac |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38345996 |
tcccagctttctttatttcagtcagaagcttgattggatctattgcaccagaaattcgaataataccatgtgttgcatcaatgttgaatgatacatctac |
38345897 |
T |
|
| Q |
101 |
aggtccaattccaacaataatgaaaatgtaagtaacgaataaaagaccaattacattccttgaaagg |
167 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38345896 |
aggtccaattccaacaataacgaaaatgtaagtaacgaataaaagaccaattacattccttgaaagg |
38345830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 45043735 - 45043871
Alignment:
| Q |
1 |
tcccagctttctttatttccgtcaaaagcttgattggatctattgcaccagaaattcgaataataccatgtgttgcatcaatgttgaatgatacatctac |
100 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| || | || || |||||||| |
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| T |
45043735 |
tcccagcttttgttatttcggtcaaaagcttacttggatctattgctccagaaattcgaataataccgtgtgttgcatcgatagtaaaggaaacatctac |
45043834 |
T |
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| Q |
101 |
aggtccaattccaacaata--atgaaaatgtaagtaa |
135 |
Q |
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| T |
45043835 |
aaagccaattccaataatatgattaaaatgtaagtaa |
45043871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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