View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_low_3 (Length: 509)
Name: NF20589_low_3
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 12875199 - 12874721
Alignment:
| Q |
15 |
aatataatataaatgaaatggattactggtaaaggggagtcagatgctttgaaggctccttccattctcttataatcaatgggattaagagaagcagcag |
114 |
Q |
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| T |
12875199 |
aatataatataaatgaaatggattactggtaaaggggagtcagaggctttgaaggctccttccattctcttataatcaatgggattaagagaagcagcag |
12875100 |
T |
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| Q |
115 |
caactttgataagaacttgatcatccttcacttcaggaataggcacgtttggatcaaatttgagaacatcaacagagtgaccatattctgagtaagtcca |
214 |
Q |
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| T |
12875099 |
caactttgataagaacttgatcatccttcacttgaggaataggcacgtttggatcaaacttgagaacatcaacagagtgaccatattctgagtaagtcca |
12875000 |
T |
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| Q |
215 |
agcttttatggtagttatttcagatgccatgattgttggaaatgagaaatgaattatttgataaaagtgatatgaggataataaaatatcagcttattga |
314 |
Q |
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| T |
12874999 |
agctttgatggtagttatttcagaggccatgattgttggaaatgagaaatgaattatttgataaaagtgatttgaggataataaaatatcagcttattga |
12874900 |
T |
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| Q |
315 |
ctg------accatgcttttaacgtgattggataaacgtatatttaaagtgcttttgggagagatgccaggtactactaccaactgacggatcacattca |
408 |
Q |
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| T |
12874899 |
ctgaccaagaccatgcttttaacgtgattggataaacgtatatttaaagtgcttttgg--gagatgcca-gtac----actaactgtcggatcacattca |
12874807 |
T |
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| Q |
409 |
tatctgttattgtccataataatgcaaattatgaaattgataaaaaaggatagtaaaggaaagaaataaatatttgtacgaaaagaata |
497 |
Q |
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| T |
12874806 |
catttgttattgttcataataatgcaaatt---aaattgataaaaaaggatagtaaaggaaagaaataaatatttgtacgaaaataata |
12874721 |
T |
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