View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20589_low_7 (Length: 410)
Name: NF20589_low_7
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_7 |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 35167973 - 35168274
Alignment:
| Q |
109 |
tcttgatgatgaaagatactaaattcttattaagttcttgatatggattgttgtgttgatgctattttgaaaatgatgacttaaattgatattaggctgt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35167973 |
tcttgatgatgaacgatactaaattcttattaagttcttgatatggattgtagtgttgatgctattttgaaaatgatgacttaaattgatattaggttgt |
35168072 |
T |
|
| Q |
209 |
ttccaggttgtaacatttaattgatatttaa--------------aaattatcctactttatgtttgttcttttgttaatgtactactttatcatcagag |
294 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35168073 |
ttccaggtagtaacatttaattcatatttaacaatttttagttagaaattctcctactttatgtttgttcttttattaatgtactactttatcatcagag |
35168172 |
T |
|
| Q |
295 |
attttaagggcttctggaaagagtggattgatgtagaaccaagggtttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgcctt |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||||||| |
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|
| T |
35168173 |
attttaagggcttctagaaagagtggattgatgtagaaccaagggtttagtgactatgacagagtgcagtttggaagtgtccagcctagtcttatgcctt |
35168272 |
T |
|
| Q |
395 |
ct |
396 |
Q |
| |
|
|| |
|
|
| T |
35168273 |
ct |
35168274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 21532032 - 21532333
Alignment:
| Q |
109 |
tcttgatgatgaaagatactaaattcttattaagttcttgatatggattgttgtgttgatgctattttgaaaatgatgacttaaattgatattaggctgt |
208 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
21532032 |
tcttgatgacgaacgatactaaattcttattaagttcttgatatggattgtagtgttgatgctattttgaaaatgatgacttaaattgatattaggttgt |
21532131 |
T |
|
| Q |
209 |
ttccaggttgtaacatttaattgatatttaa--------------aaattatcctactttatgtttgttcttttgttaatgtactactttatcatcagag |
294 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21532132 |
ttccaggtagtaacatttaattcatatttaacaatttttagttagaaattctcctactttatgtttgttcttttattaatgtactactttatcatcagag |
21532231 |
T |
|
| Q |
295 |
attttaagggcttctggaaagagtggattgatgtagaaccaagggtttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgcctt |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||| |
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|
| T |
21532232 |
attttaagggcttctagaaagagtggattgatgtagaaccaagggtttagtgactatgacagagtgcattttggaagtgtccagcctagtcttatgcctt |
21532331 |
T |
|
| Q |
395 |
ct |
396 |
Q |
| |
|
|| |
|
|
| T |
21532332 |
ct |
21532333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 21532040 - 21531935
Alignment:
| Q |
8 |
tcatcaagaatcatta-tttcaaaggctaatctataaactagttatttctaacttcaataaattgagtcattaagcactaactcaactgttgaaatagtt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
21532040 |
tcatcaagaatcattactttcaaaggctaatctatcaactagttgtttttaacttcaataaattgattccttaagcactaactcaactgttgaaatagtt |
21531941 |
T |
|
| Q |
107 |
tatctt |
112 |
Q |
| |
|
|||||| |
|
|
| T |
21531940 |
tatctt |
21531935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 35167985 - 35167876
Alignment:
| Q |
4 |
ttcatcatcaagaatcatta-tttcaaaggctaatctataaactagttatttctaacttcaataaattgagtcattaagcactaactcaactgttgaaat |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||| |||||||||| || |||||||||||||||||||||||||| |
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|
| T |
35167985 |
ttcatcatcaagaatcattactttcaaaggctaatctatcaactagttgtttttaactttaataaattgattccttaagcactaactcaactgttgaaat |
35167886 |
T |
|
| Q |
103 |
agtttatctt |
112 |
Q |
| |
|
|||||||||| |
|
|
| T |
35167885 |
agtttatctt |
35167876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 43313109 - 43312808
Alignment:
| Q |
109 |
tcttgatgatgaaagatactaaattcttattaagttcttgatatggattgttgtgttgatgctattttgaaaatgatgacttaaattgatattaggctgt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43313109 |
tcttgatgatgaacgatactaaattcttattaagttcttgatatggattgtagtgttgatgctattttgaaaatgatgacttaaattgatattaggttgt |
43313010 |
T |
|
| Q |
209 |
ttccaggttgtaacatttaattgatatttaa--------------aaattatcctactttatgtttgttcttttgttaatgtactactttatcatcagag |
294 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43313009 |
ttccaggtagtaacatttaattcatatttaacaatttttagttagaaattctcctactttatgtttgttcttttattaatgtactactttatcatcagag |
43312910 |
T |
|
| Q |
295 |
attttaagggcttctggaaagagtggattgatgtagaaccaagggtttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgcctt |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||| |
|
|
| T |
43312909 |
attttaagggcttctagaaagagtggattgatgtagaaccaagggtttagtgactatgacagagtgcattttggaagtgtccagcctagtcttatgcctt |
43312810 |
T |
|
| Q |
395 |
ct |
396 |
Q |
| |
|
|| |
|
|
| T |
43312809 |
ct |
43312808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 43313097 - 43313206
Alignment:
| Q |
4 |
ttcatcatcaagaatcatta-tttcaaaggctaatctataaactagttatttctaacttcaataaattgagtcattaagcactaactcaactgttgaaat |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
43313097 |
ttcatcatcaagaatcattactttcaaaggctaatctatcaactagttgtttttaacttaaataaattgattccttaagcactaactcaactgttgaaat |
43313196 |
T |
|
| Q |
103 |
agtttatctt |
112 |
Q |
| |
|
|||||||||| |
|
|
| T |
43313197 |
agtttatctt |
43313206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 34744221 - 34744522
Alignment:
| Q |
109 |
tcttgatgatgaaagatactaaattcttattaagttcttgatatggattgttgtgttgatgctattttgaaaatgatgacttaaattgatattaggctgt |
208 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34744221 |
tcttgatgacgaacgatactaaattcttattaagttcttgatatggattgtagtgttgatgctattttgaaaatgatgacttaaattgatattaggttgt |
34744320 |
T |
|
| Q |
209 |
ttccaggttgtaacatttaattgatatttaa--------------aaattatcctactttatgtttgttcttttgttaatgtactactttatcatcagag |
294 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34744321 |
ttccaggtagtaacatttaattcatatttaacaatttttagttagaaattctcctactttatgtttgttcttttattaatgtactactttatcatcagag |
34744420 |
T |
|
| Q |
295 |
attttaagggcttctggaaagagtggattgatgtagaaccaagggtttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgcctt |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||| |
|
|
| T |
34744421 |
attttaagggcttctagaaagagtggattgatgtagaaccaagggtttagtgactatgacagagtgcattttggaagtgtccagcctagtcttatgcctt |
34744520 |
T |
|
| Q |
395 |
ct |
396 |
Q |
| |
|
|| |
|
|
| T |
34744521 |
ct |
34744522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 34744229 - 34744124
Alignment:
| Q |
8 |
tcatcaagaatcatta-tttcaaaggctaatctataaactagttatttctaacttcaataaattgagtcattaagcactaactcaactgttgaaatagtt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||| ||| |||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34744229 |
tcatcaagaatcattactttcaaaggctaatctatcaactagttgtttttaacttaaataaattgattccttaagcactaactcaactgttgaaatagtt |
34744130 |
T |
|
| Q |
107 |
tatctt |
112 |
Q |
| |
|
|||||| |
|
|
| T |
34744129 |
tatctt |
34744124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 240 - 396
Target Start/End: Complemental strand, 32221680 - 32221524
Alignment:
| Q |
240 |
aaattatcctactttatgtttgttcttttgttaatgtactactttatcatcagagattttaagggcttctggaaagagtggattgatgtagaaccaaggg |
339 |
Q |
| |
|
||||| ||||||||||||| ||||||| | |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
32221680 |
aaattctcctactttatgtctgttcttatattaatgtagtactttattatcagagattttaagggcatctggaaagagtggattgatgcagaaccaaggg |
32221581 |
T |
|
| Q |
340 |
tttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgccttct |
396 |
Q |
| |
|
||||||||||||||| || | ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
32221580 |
tttagtgactatgacagagtgcagtttggaagtaccaaacctagtcttatgccttct |
32221524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 11485 - 11386
Alignment:
| Q |
297 |
tttaagggcttctggaaagagtggattgatgtagaaccaagggtttagtgactatgactgatggaagtttggaagtgtcaagcctagtcttatgccttct |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
11485 |
tttaagggcttctagaaagagtggattgatgtagaaccaagggtttagtgactatgacagagtgcagtttggaagtgtccagcctagtcttatgccttct |
11386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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