View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20589_low_8 (Length: 395)
Name: NF20589_low_8
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 48119176 - 48118808
Alignment:
| Q |
13 |
aatataaatatgtcctcctttacaactttatgtcatacaaaaaaccaaagtttacttcaaggcttcaataatcatagtcaaaggttgtattcgtgaaaga |
112 |
Q |
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| T |
48119176 |
aatataaatatgtcctcctttacaacttcatgtcatacaaaaaaccaaagtttacttcaaggcttcaataatcatagtcaaaggttgtgttcgtgaaaga |
48119077 |
T |
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| Q |
113 |
aagaaaga--------gaaacaatggaaggtttgattccatatcttatccatgccatcaagaagcagaaacctcatcaccacagcttcaacaggagcttt |
204 |
Q |
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| T |
48119076 |
aagaaagaaagaaagagaaacaatggaaggtttgattccatatcttatccatgccatcaagaagcagaaacctcatcaccacagcttcaacaggagcttt |
48118977 |
T |
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| Q |
205 |
tctcattctgggagcgtaaatcgtagctaccacatgttattggaatctgactcattaacaggatcctctcatagaagaaccaggtctgattttcagcaac |
304 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48118976 |
tctcattctgggagcgtaaatcgtagttaccacatgttattggaatctgactcattaacaggatcctctcatagaagaaccaggtctgattttcagcaac |
48118877 |
T |
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| Q |
305 |
ccacaactgagttcttagagcacagatttggtgttgatggaagtttggttagccccagaggcatcactg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48118876 |
ccacaactgagttcttagagcacagatttggtgttgatggaagtttggttagcccaagaggcatcactg |
48118808 |
T |
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