View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20589_low_9 (Length: 362)
Name: NF20589_low_9
Description: NF20589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20589_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 58 - 343
Target Start/End: Original strand, 3702043 - 3702327
Alignment:
| Q |
58 |
gtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgt |
157 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3702043 |
gtgctccttggttt-aaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaaggtacaaaagatgagttgt |
3702141 |
T |
|
| Q |
158 |
gtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaac |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3702142 |
gcgagcaacaatatgagaggttcaaacagttggtggtagaagccaagacactgcttggaaaggcatgtcaagatttaggagatgagttgtgtgagtaaac |
3702241 |
T |
|
| Q |
258 |
attgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702242 |
attgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagt |
3702327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 34 - 284
Target Start/End: Original strand, 3713443 - 3713693
Alignment:
| Q |
34 |
tatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacat |
133 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||||||| |||| | |||||||||||||||| || |||||||||||||||||||||||| |||||| || |
|
|
| T |
3713443 |
tatagtgggtatgcctgtactagagtactcattggtttaaaggatgatgagctacatttatgcggtgatcctagtgttttgcatattgtttgaaagatat |
3713542 |
T |
|
| Q |
134 |
atcaagatacaaaagatgagttgtgtgagc---aacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaaga |
230 |
Q |
| |
|
|| |||||||| ||||||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| | |||| |||| |
|
|
| T |
3713543 |
ataaagatacagaagatgagttgtgcgagcaaaaactatatgagagattcaaacagttggtggttgaagcaaagaccctgcttggaaatgtatgttaaga |
3713642 |
T |
|
| Q |
231 |
tttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
284 |
Q |
| |
|
| | ||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
3713643 |
tacaggagatgagttgtgtgag-caacattatgaga--tttgccaccagaaatt |
3713693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3701955 - 3702042
Alignment:
| Q |
1 |
tggtggaaatggcttcgtcgcaggaatggtatgtatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctac |
88 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701955 |
tggtggaaatggcttcgtcgcagcaatggtatgtatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctac |
3702042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 3719951 - 3720018
Alignment:
| Q |
82 |
gagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaaga |
149 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
3719951 |
gagctacatttatgcggtgatcctaatgttttgcatattgttcaaaagacatatcaagatacagaaga |
3720018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
169 |
tatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
264 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| | || |||||||||||||| | |||||| ||| |
|
|
| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
|
| Q |
265 |
gaactttgccaccagaaa |
282 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 3520800 - 3520615
Alignment:
| Q |
33 |
gtatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagaca |
132 |
Q |
| |
|
||||||||| ||||| ||||||| | |||||||||||| | || | | ||| |||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
3520800 |
gtatagaggttatgcatggactagggcgctccttggtttgatggctgacgagatacatttatgcggtgatcctagtgttttggatattgttcgaaagatc |
3520701 |
T |
|
| Q |
133 |
tatcaagatacaaaagatgagttgtgtgagcaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaa |
218 |
Q |
| |
|
| ||| || ||| |||||| |||| ||||||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||| |
|
|
| T |
3520700 |
tgtcaggaaacaggagatgatttgtatgagcaacattatgagaggttcaaaccgttggtagtcgaagcaaagaccctgcttggaaa |
3520615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University