View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_1 (Length: 713)
Name: NF2058_high_1
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 541 - 699
Target Start/End: Complemental strand, 51376183 - 51376026
Alignment:
| Q |
541 |
attctttatagtttttcttaggttttattggtcttcctctacttctagcaattgggtcatgttgaaatttgtaaaaacaaataccaaatggttacaatgg |
640 |
Q |
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| T |
51376183 |
attctttatagtttttcttaggttttattggtcttcctctacttctagcaattggatcatgttgaaatttgtaaaaacaaataccaaatggttacaat-- |
51376086 |
T |
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| Q |
641 |
tttggttcttctatctttacttcctcaacc----tatataattgattgtcacagagtatttat |
699 |
Q |
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| T |
51376085 |
---ggttcttctatctttacttcctcaacctatatatataattgattgtcacagagtatttat |
51376026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51376272 - 51376229
Alignment:
| Q |
1 |
tattgaaggaacacttatgtaaatgactaaaagaggattggaaa |
44 |
Q |
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| T |
51376272 |
tattgaaggaacacttctgtaaatgaataaaagaggattggaaa |
51376229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 51821029 - 51821074
Alignment:
| Q |
62 |
cttttaggtaagcctttattccatcatgaaagaaatttgactcttg |
107 |
Q |
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| T |
51821029 |
cttttaggtaagtctttattatatcatgaaagaaaattgactcttg |
51821074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 409
Target Start/End: Original strand, 30506 - 30643
Alignment:
| Q |
266 |
gaatggttctaacaaacctttagcctatgcttgtttgtagttttagttatcttataatgtaattctaataaagttttctgtcctgtgaatggggggcttc |
365 |
Q |
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| T |
30506 |
gaatggttctaactaatctttagcttatgcttgt----agtattagttgtcttacaatgtaattctaataaagctttttgtcctgtgact--ggaaattt |
30599 |
T |
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| Q |
366 |
ccaaatattttgtcgagccattgctttactgttggtttgcagga |
409 |
Q |
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| T |
30600 |
caaaatgatttgtagagccattgcttcactgttggtttgcagga |
30643 |
T |
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