View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_15 (Length: 414)
Name: NF2058_high_15
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 24 - 393
Target Start/End: Original strand, 31036835 - 31037210
Alignment:
| Q |
24 |
actcatcaaatgcgctggatggcaaaggcgttggcgtttggtctaatggagggccgatggccagtgaatggaaaagatcgtatacagagaaggttgcatc |
123 |
Q |
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| T |
31036835 |
actcatcaaatgcgctggatggcaaaggcgttggcgtatggtctaatggagggccgagggccagtgaatggaaaaaatcgtatacagagaaggttgtatc |
31036934 |
T |
|
| Q |
124 |
gtgtaaaagtatatagagaagctgatacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacat |
223 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036935 |
gtgtaaaagtatatagagaagctgagacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacat |
31037034 |
T |
|
| Q |
224 |
agtatattacaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttcctt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037035 |
agtatattacaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttcctt |
31037134 |
T |
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| Q |
324 |
cttaaagataacaatacttga------ctcctttcatgtcacattctagtgtcgaaaacatttgtgtgaaacctaa |
393 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31037135 |
cttaaagataacaatacttgacaatatctcctttcatgtcacattctagtgtcgaaaacatttgtgtgaaacctaa |
31037210 |
T |
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