View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2058_high_17 (Length: 402)

Name: NF2058_high_17
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2058_high_17
NF2058_high_17
[»] chr5 (3 HSPs)
chr5 (20-397)||(35068912-35069285)
chr5 (20-304)||(35052995-35053280)
chr5 (347-382)||(35053312-35053347)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 35068912 - 35069285
Alignment:
Q  20 tcacctaccatatgtaaaaggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 119  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35068912 tcacctaccatgtgtaaaaggacacagcatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 35069011  T
Q  120 gagattaataagtgtaagggaaggattgaattgatagaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctcttt 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||       |||||||||||    
T  35069012 gagattaataagtgtaagggaaggattgaattgacagaaaaaattcaattgcttaagagaatggagccacgttttctagcaatttttttggtagctcttt 35069111  T
Q  220 catttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaattgnnnnnnnn 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            
T  35069112 catttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaagtg----aaaa 35069207  T
Q  320 ncgtaagattagttattaagagaaacagttggcataaaagcattatcaaaataatgcttcctaaattcctatgctact 397  Q
     ||| | |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35069208 acgtgacattagttaataagagaaaaagttggaataaaagcattatcaaaataatgcttcctaaattcctatgctact 35069285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 35052995 - 35053280
Alignment:
Q  20 tcacctaccatatgtaaaaggacacaacatcacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagag 119  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  35052995 tcacctaccatgtgtaaaaggacacaacctcacaaattattccattatatataatgttaatgtgcttggtc-atacttaagtattgatcaaaccatagag 35053093  T
Q  120 gagattaataagtgtaagggaaggattgaattgata--gaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctct 217  Q
    |||||| ||||||||||||||| ||||||||||| |  |||||| || |||||||||||||||||||||||| |||||||||||       |||||||||    
T  35053094 gagattcataagtgtaagggaaagattgaattgacaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaatttttttggtagctct 35053193  T
Q  218 ttcatttccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcatt 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35053194 ttcatctccactctttgttcagtccttggtgcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcaggttcatt 35053280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 35053312 - 35053347
Alignment:
Q  347 gttggcataaaagcattatcaaaataatgcttccta 382  Q
    |||||||||||||||||||||||||| |||||||||    
T  35053312 gttggcataaaagcattatcaaaatagtgcttccta 35053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University