View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_21 (Length: 371)
Name: NF2058_high_21
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 145 - 364
Target Start/End: Complemental strand, 23852799 - 23852576
Alignment:
| Q |
145 |
tagcaatcaaattaacaataacattga----aggaaacaaaatatgaaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatcgga |
240 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852799 |
tagcaatcaaattaacaataacattgacataaggaaacaaaatatgaaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatcgga |
23852700 |
T |
|
| Q |
241 |
aggttcttcttcattgttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaactt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852699 |
aggttcttcttcattgttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaactt |
23852600 |
T |
|
| Q |
341 |
gtagcaatatttgtagaataatct |
364 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
23852599 |
gtagcaatatttgtagaagaatct |
23852576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 142 - 358
Target Start/End: Complemental strand, 23857188 - 23856968
Alignment:
| Q |
142 |
gagtagcaatcaaattaacaataacattg----aaggaaacaaaatatgaaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatc |
237 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
23857188 |
gagtagcaatcaaattaacaataacattgccataaggaaacaaaatatgaaaacttgtttaaaggtagagtgataaatcaagctcagatgatccagaatc |
23857089 |
T |
|
| Q |
238 |
ggaaggttcttcttcattgttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaa |
337 |
Q |
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| T |
23857088 |
ggaaggtttttcttcaatgttagacttcgatagatcacgaataccatctttggtagatgtaggagccacaataattttcttttctatgtttgagtttaaa |
23856989 |
T |
|
| Q |
338 |
cttgtagcaatatttgtagaa |
358 |
Q |
| |
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||||| ||||||||||||| |
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| T |
23856988 |
cttgttttaatatttgtagaa |
23856968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 23852920 - 23852861
Alignment:
| Q |
18 |
ctaagctcacgaggacaaaaggccgcacattcgatcctcggtaaaagttgctcacatgac |
77 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23852920 |
ctaagctcacgaggacaaaaggctgcacattcgatcctcggtaaaagttgctcacatgac |
23852861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 364
Target Start/End: Original strand, 3156367 - 3156583
Alignment:
| Q |
142 |
gagtagcaatcaaattaacaataacattgaaggaaacaaaatatgaaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatcggaa |
241 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||| |
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| T |
3156367 |
gagtagcaatcaaattaacaa--acat--aaggaaacaatata--aaaacttatttaaagcttgagtgataaatcaagctcagatgattcagaatcagaa |
3156460 |
T |
|
| Q |
242 |
ggttcttcttcattgttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaacttg |
341 |
Q |
| |
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||||||| |||| |||||||||||||| ||||||||||| ||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
3156461 |
ggttctttttcaatgttagactttgattgatcatgaatatcatctttggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttg |
3156560 |
T |
|
| Q |
342 |
tagcaatatttgtagaataatct |
364 |
Q |
| |
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||||| |||||||||| ||||| |
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| T |
3156561 |
cagcaacatttgtagaagaatct |
3156583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 187 - 364
Target Start/End: Original strand, 3138671 - 3138851
Alignment:
| Q |
187 |
aaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatcggaaggttcttcttcattgttagactttgatagatcatgaataccatct |
286 |
Q |
| |
|
||||||| |||||||||| ||||||||||| || || || ||| ||||||| ||||||||||||||| |||| ||||||||| ||||||||||| |||| |
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| T |
3138671 |
aaaacttatttaaagcttaagtgataaatcaagatcggaagattcagaatcagaaggttcttcttcaatgttggactttgattgatcatgaatatcatca |
3138770 |
T |
|
| Q |
287 |
t---tgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaacttgtagcaatatttgtagaataatct |
364 |
Q |
| |
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| ||| |||| | ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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|
| T |
3138771 |
tcattggtagaattaggagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatct |
3138851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 364
Target Start/End: Complemental strand, 3167940 - 3167708
Alignment:
| Q |
142 |
gagtagcaatcaaattaacaataacattgaa----ggaaacaaaatatgaaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatc |
237 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||||||||||||||||| |||||| | ||| ||||||| |
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| T |
3167940 |
gagtagcaatcaaattaacaagaacattgacttatggaaacaaaatacaaaaatttaattaaagcttgagtgataaatcaagctcaaaagattcagaatc |
3167841 |
T |
|
| Q |
238 |
ggaaggttcttcttcattg------ttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgag |
331 |
Q |
| |
|
|| ||||||||||||||| || ||||||||| ||||||||||| ||| |||| |||| | ||| |||||| || | ||||| | |||||| |
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| T |
3167840 |
agagggttcttcttcattgttggacttggactttgattgatcatgaatatcattattggaagaaataggagccacaatgatatctttttctacctttgag |
3167741 |
T |
|
| Q |
332 |
tttgaacttgtagcaatatttgtagaataatct |
364 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |
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|
| T |
3167740 |
tttgaacttgtagcaacatttgtagaagaatct |
3167708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 364
Target Start/End: Complemental strand, 2023397 - 2023275
Alignment:
| Q |
242 |
ggttcttcttcattgttagactttgatagatcatgaataccatctttgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaacttg |
341 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||| |||| |||| ||||||||| || |||||||| |||||| | ||||||||||||||||| |
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| T |
2023397 |
ggttcttcttcattgttggattttgattgatcatgaatatcatcattggttgaagtgggagccataataattttcttttctaggtttgagtttgaacttg |
2023298 |
T |
|
| Q |
342 |
tagcaatatttgtagaataatct |
364 |
Q |
| |
|
| | || |||||||||| ||||| |
|
|
| T |
2023297 |
ttgtaacatttgtagaagaatct |
2023275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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