View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_29 (Length: 312)
Name: NF2058_high_29
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_29 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2795282 - 2795593
Alignment:
| Q |
1 |
ggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatc |
100 |
Q |
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| T |
2795282 |
ggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatc |
2795381 |
T |
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| Q |
101 |
attgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacgaaggactatattc |
200 |
Q |
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| T |
2795382 |
attgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacgaaggactatattc |
2795481 |
T |
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| Q |
201 |
ggttggtgggattgtctgctacactccctaattttgaagacgtggcacggttcttgcgtgttgatcataataaggggttgttttactttgataatagtta |
300 |
Q |
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| T |
2795482 |
ggttggtgggattgtctgctacactccctaattttgaagacgtggcgcggttcttgcgtgttgatcataataaggggttgttttactttgataatagtta |
2795581 |
T |
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| Q |
301 |
tagacccgttcc |
312 |
Q |
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|||||||||||| |
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| T |
2795582 |
tagacccgttcc |
2795593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 29262796 - 29263106
Alignment:
| Q |
2 |
gaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatca |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| ||||||||||||||| | |||| |
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| T |
29262796 |
gaagagactcaaattattgtgacaactcctgagaagtgggatattatcacccgaaagtcgggagatcgaacttatacgcagcttgtgaagcttgtcatca |
29262895 |
T |
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| Q |
102 |
ttgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacgaaggactatattcg |
201 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||| |||||||| |
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| T |
29262896 |
ttgatgaaattcatctccttcatgataacagagggcctgttcttgaaagtattgttgctagaacagttaggcagattgaaacatctaaggattatattcg |
29262995 |
T |
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| Q |
202 |
gttggtgggattgtctgctacactccctaattttgaagacgtggcacggttcttgcgtgttgatcataataaggggttgttttactttgataatagttat |
301 |
Q |
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|||||||||||||| ||||| |||||||||| |||||| ||||||| |||| |||||||||||| || ||||| || ||||| |||||||| |||||| |
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| T |
29262996 |
tttggtgggattgtcggctactctccctaattatgaagatgtggcactgttcctgcgtgttgatctgaacaagggtttattttattttgataacagttat |
29263095 |
T |
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| Q |
302 |
agacccgttcc |
312 |
Q |
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||||| ||||| |
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| T |
29263096 |
agacctgttcc |
29263106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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