View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_33 (Length: 288)
Name: NF2058_high_33
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_33 |
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| [»] scaffold0426 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 16071620 - 16071350
Alignment:
| Q |
1 |
cacagacatataccgcccaaatgatatcatcaagactcttttctctttctatgtacattttcagcatgtcttgaaacaaagaatacacatgacgagcatc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16071620 |
cacaaacatataccgcccaaatgatatcatcaagactcttttctctttctatgtacattttcagcatgtcttgaaacaaagaatacacatgacgagcatc |
16071521 |
T |
|
| Q |
101 |
ttgaaatcgagtctgtatgaaaaacatctattagactcgtcaaaactgaaatatttcatcgattaattctacattaaaaacataatatgtgcaaggtctg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16071520 |
ttgaaatcgagtctgcatgaaaaacatctattagactcgtcaaaactgaaatatttcatcgattaattctacattgaaaacataatatgtgcaaggtctg |
16071421 |
T |
|
| Q |
201 |
ggattcgaaccccatacaccaccaaaagaatcgaatccataacataacttaccttcaccttcatcataaat |
271 |
Q |
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| T |
16071420 |
gggttcgaaccccatacaccaccaaaagaatcgaatccataatataacttaccttcaccttcatcataaat |
16071350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 16068281 - 16068121
Alignment:
| Q |
27 |
tcatcaagactcttttctctttctatgtacattttcagcatgtcttgaaacaaagaatacacatgacgagcatcttgaaatcgagtctgtatgaaaaaca |
126 |
Q |
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||||||||| |||||||| ||| | ||||||||| ||| |||||| ||||| | ||||||||||||| ||||| ||||||||||||||| |||||||| | |
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| T |
16068281 |
tcatcaagattcttttctttttgtctgtacatttgcagtatgtctagaaacgacgaatacacatgaccagcatgttgaaatcgagtctgcatgaaaaaga |
16068182 |
T |
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| Q |
127 |
tctattagactcgtcaaaactgaaatatttcatcg---attaattctacattaaaaacata |
184 |
Q |
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| T |
16068181 |
tctattagactcatcaaaactgaaaaatttcattgattattaattctacattgaaaacata |
16068121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 16068109 - 16068076
Alignment:
| Q |
233 |
gaatccataacataacttaccttcaccttcatca |
266 |
Q |
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| T |
16068109 |
gaatccataatataacttaccttcaccttcatca |
16068076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 42168976 - 42168931
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaa |
226 |
Q |
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|||| ||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
42168976 |
catagtatatgcaaggtctggggttcgaaccccagacaccaccaaa |
42168931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 16089480 - 16089512
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaacccc |
213 |
Q |
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| T |
16089480 |
cataatatttgcaaggtctgggattcgaacccc |
16089512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 3580744 - 3580790
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
3580744 |
cataatatatgcaaggtctgggattcgaaccccggacaccaccaaaa |
3580790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 11269723 - 11269770
Alignment:
| Q |
180 |
acataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
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||||||||| |||||||||| || ||||||||||| |||||||||||| |
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| T |
11269723 |
acataatatatgcaaggtcttgggttcgaaccccagacaccaccaaaa |
11269770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 47806287 - 47806241
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
| |
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|||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
47806287 |
cataatatatgcaaggtctggggttcgaaccccgaacaccaccaaaa |
47806241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 2916132 - 2916178
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
2916132 |
cataatatatgcaaggtctgggattcgaaccccggacatcaccaaaa |
2916178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 6384881 - 6384927
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| | |||||||||||| |
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| T |
6384881 |
cataatatatgcaaggtctggggttcgaaccctagacaccaccaaaa |
6384927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 3533039 - 3532995
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaa |
226 |
Q |
| |
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|||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
3533039 |
cataatatatgcaaggtatggg-ttcgaaccccatacaccaccaaa |
3532995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 35191848 - 35191802
Alignment:
| Q |
181 |
cataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||| ||||| |||||| |
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| T |
35191848 |
cataatatatgcaaggtctggggttcgaaccccagacaccgccaaaa |
35191802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0426 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 5870 - 5825
Alignment:
| Q |
182 |
ataatatgtgcaaggtctgggattcgaaccccatacaccaccaaaa |
227 |
Q |
| |
|
||||||| || |||||||||| ||||||||||| |||||||||||| |
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|
| T |
5870 |
ataatatatgtaaggtctggggttcgaaccccagacaccaccaaaa |
5825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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