View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_42 (Length: 244)
Name: NF2058_high_42
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2795632 - 2795859
Alignment:
| Q |
1 |
cttttcaaaggtaccagttgatgaatgatatctgctttgagaaagttatggctgaagccggaaagcatcaggttcttatctttgtacattcaaggaaaga |
100 |
Q |
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| T |
2795632 |
cttttcaaaggtaccagttgatgaatgatatctgctttgagaaagttatggctgaagccggaaagcatcaggttcttatctttgtacattcaaggaaaga |
2795731 |
T |
|
| Q |
101 |
aactgctaaaacagcaagagccatcagagatactgcacttgcaaatgacactcttggtaggttccttaaagaagatagtgcaagccgtgagattcttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795732 |
aactgctaaaacagcaagagccatcagagatactgcacttgcaaatgacactcttggtaggttccttaaagaagatagtgcaagccgtgagattcttcat |
2795831 |
T |
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| Q |
201 |
agtcataccgatcttgtgaagagcaatg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2795832 |
agtcataccgatcttgtgaagagcaatg |
2795859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 29263148 - 29263367
Alignment:
| Q |
4 |
ttcaaaggtaccagttgatgaatgatatctgctttgagaaag-ttatggctgaagccggaaagcatcaggttcttatctttgtacattcaaggaaagaaa |
102 |
Q |
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|||| |||| ||||||||||||||||||||| || ||||| || ||| || ||| || |||||||||||||||||||||||||||||||||||||| | |
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| T |
29263148 |
ttcagaggttccagttgatgaatgatatctg-ttaccgaaaggttctggatgtagctggtaagcatcaggttcttatctttgtacattcaaggaaagaga |
29263246 |
T |
|
| Q |
103 |
ctgctaaaacagcaagagccatcagagatactgcacttgcaaatgacactcttggtaggttccttaaagaagatagtgcaagccgtgagattcttcatag |
202 |
Q |
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|||||||||| || ||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29263247 |
ctgctaaaactgctagagccatcagagatgctgcactcgcagatgatactcttggtaggttccttaaagaagatagtgcaagccgtgagattcttcatac |
29263346 |
T |
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| Q |
203 |
tcataccgatcttgtgaagag |
223 |
Q |
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|||||| |||||||||||||| |
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| T |
29263347 |
tcatactgatcttgtgaagag |
29263367 |
T |
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