View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_43 (Length: 242)
Name: NF2058_high_43
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_43 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 18617739 - 18617966
Alignment:
| Q |
1 |
cataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatg |
100 |
Q |
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| T |
18617739 |
cataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgttccacatgaaccagtaggaccagagccacatg |
18617838 |
T |
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| Q |
101 |
agccttttgttcacttgttgatgatcccgctggagttgctgagcatggagcgagatgaggcattgtacctgaggaggaggaggcagaggaggatccagat |
200 |
Q |
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| T |
18617839 |
agccttttgttcacatgttgatgatcccgctggagttgttgagcatggagcaggaggaggcattgtacctgaggaggacgaggcagagaaggatccagat |
18617938 |
T |
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| Q |
201 |
gagtaccttgaggatggagtgttcattg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18617939 |
gagtaccttgaggatggagtgttcattg |
18617966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 20357045 - 20357234
Alignment:
| Q |
35 |
ggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgagccttttgtt--cacttgttgatgatcccgctg |
132 |
Q |
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| T |
20357045 |
ggttgtacctagctctccatgacatgggtgttgtccca-----acc-gtaggaccagacccacatgagtcctttgtttccccctgttgctgatcctgctg |
20357138 |
T |
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| Q |
133 |
gagttgctgagcatggagcgagatgaggcattgtacctgaggaggaggaggcagaggaggatccagatgagtaccttgaggatggagtgttcattg |
228 |
Q |
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| T |
20357139 |
atgttgctgatcagggagtaggaggtggccatgcacctgaggaggaggatccggaggaggacccagaggagtaccttgaggagggagagttcattg |
20357234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 19239939 - 19239776
Alignment:
| Q |
19 |
attttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgagccttttgttca-cttg |
117 |
Q |
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||||||||||| || |||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||| |||||||| | || |
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| T |
19239939 |
attttaccattgtagaggttgtacttagctcttcatgacatgggtgttgtcccacctggactagtaggaccagagccacgtgagccctttgttcaccatg |
19239840 |
T |
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| Q |
118 |
ttgatgatcccgctggagttgctgagcatggagcgagatgaggcattgtacctgaggaggagga |
181 |
Q |
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| T |
19239839 |
ttgatgatcccgctgaagttgatgagaatggagcaggaggaggaattgcacctgaggaggagga |
19239776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 13463845 - 13463887
Alignment:
| Q |
186 |
gaggaggatccagatgagtaccttgaggatggagtgttcattg |
228 |
Q |
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| T |
13463845 |
gaggaggatccagatgagtacctggtggatggagagttcattg |
13463887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 141793 - 141923
Alignment:
| Q |
7 |
accatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgagcctt |
106 |
Q |
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|||| |||||||||||||||||| ||| |||||||| ||| ||| |||||||| ||||||||||| ||| ||||||||||| ||||||||||| | |
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| T |
141793 |
accacagagatgattttaccatttcagaggttgtacctagctctccatgacataggtgttgtccc------acccgtaggaccagacccacatgagccct |
141886 |
T |
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| Q |
107 |
ttgttcact-tgttgatgatcccgctggagttgctga |
142 |
Q |
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|||||| || ||||| |||||| |||| |||||||| |
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| T |
141887 |
ttgttccctctgttgctgatcctgctgatgttgctga |
141923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 21620791 - 21620725
Alignment:
| Q |
7 |
accatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
73 |
Q |
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| T |
21620791 |
accacagagatgattctaccatttcagaggttgtacctagctctccatgacatgggtgttgtcccac |
21620725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 21628250 - 21628184
Alignment:
| Q |
7 |
accatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
73 |
Q |
| |
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|||| |||||||||| ||||||| ||| |||||||| ||| || |||||||||||||||||||||| |
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| T |
21628250 |
accacagagatgattctaccatttcagaggttgtacctagctccccatgacatgggtgttgtcccac |
21628184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 24984331 - 24984231
Alignment:
| Q |
82 |
gtaggaccagagccacatgagccttttgtt-cacttgttgatgatcccgctggagttgctgagcatggagcgagatgaggcattgtacctgaggaggagg |
180 |
Q |
| |
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||||||||||| ||||||||||| |||||| | ||||||| |||| | |||| ||||||||||| |||| || ||||| || |||||||||||||| |
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| T |
24984331 |
gtaggaccagacccacatgagccctttgttccccttgttgttgattctgctgatgttgctgagcagggagtaggaggaggccatgcacctgaggaggagg |
24984232 |
T |
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| Q |
181 |
a |
181 |
Q |
| |
|
| |
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|
| T |
24984231 |
a |
24984231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 393016 - 392948
Alignment:
| Q |
5 |
agaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
73 |
Q |
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|||||| |||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||||||||| |
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| T |
393016 |
agaccacagagatgattctaccattgtagaggttgtacctagctctccatgacatgggtgttgtcccac |
392948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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