View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_46 (Length: 238)
Name: NF2058_high_46
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39478648 - 39478423
Alignment:
| Q |
1 |
tatctgtacaattatttcgggtcttgtttatcaagtacagaccaatctaacactgtctctatttattcagtttaggtgctatatcgacattgattgtaac |
100 |
Q |
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| T |
39478648 |
tatctgtgcaattatttcgggtcttgtttatgaagtacggaccaatctaacactgtctccatttattcagtttaggcgctatatcgacattgattgtaac |
39478549 |
T |
|
| Q |
101 |
tattagtataattatttactatgtcacccataccatacatttcaatctaggaaaggttttacattctctcatatagtatatannnnnnnaaaattcccgt |
200 |
Q |
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| T |
39478548 |
tattagtataattatttcctatgtcacccataccatacatttcaatctaggaaaggttttacattctctcatatagtatatattttttttaaattcctgt |
39478449 |
T |
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| Q |
201 |
tgttaccttcatttaatgatgctttt |
226 |
Q |
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| T |
39478448 |
tgttaccttcatttaatgatgttttt |
39478423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 39468886 - 39469013
Alignment:
| Q |
41 |
accaatctaacactgtctctatttattcagtttaggtgctatatcgacattgattgtaactattagtataattatttactatgtcacccataccatacat |
140 |
Q |
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| T |
39468886 |
accaatccaacactatctccattcattcagttaaggtgctatattgacattgattgtaactattagtacaattcttttctctgtcacccatgc-----at |
39468980 |
T |
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| Q |
141 |
ttcaatctaggaaaggttttacattctctcata |
173 |
Q |
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| T |
39468981 |
ttcaatctaggaaaagttgtacattctttcata |
39469013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 39397301 - 39397168
Alignment:
| Q |
45 |
atctaacactgtctctatttattcagtttaggtgctatatcgacattgattgt----aactattagtataat-----tatttactatgtcacccatacca |
135 |
Q |
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| T |
39397301 |
atctaacactatctccattgattcagttaaggtcctatattgacattgattgtttgtaactattagtataatataattctttcctctgtcactcg----a |
39397206 |
T |
|
| Q |
136 |
tacatttcaatctaggaaaggttttacattctctcata |
173 |
Q |
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| T |
39397205 |
tacatttcaatctaagaaaggttttacattctctcata |
39397168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 16113953 - 16114073
Alignment:
| Q |
48 |
taacactgtctctatttattcagtttaggtgctatatcgacattgattgtaactattagtataattatttactatgtcacccataccatacatttcaatc |
147 |
Q |
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| T |
16113953 |
taacactgtctccatttatttagttttggtgcgatattgacattgattgtaactgttagtataattctttcctatgtca-----gccataaatttcaatc |
16114047 |
T |
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| Q |
148 |
taggaaaggttttacattctctcata |
173 |
Q |
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| T |
16114048 |
tcagaaaggttttacattctttcata |
16114073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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