View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_6 (Length: 509)
Name: NF2058_high_6
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Original strand, 48109 - 48595
Alignment:
| Q |
19 |
gaagcgtaaggtcttctctttccctttacctgcttccatcattcctgaagttgatctttgcaagtctgatccttgggatttacctggtatctaccttttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48109 |
gaagcgtaaggtcttctctttccctttacctgcttccatcattcctgaagttgatctttgcaagtctgatccttgggatttacctggtatctaccttttc |
48208 |
T |
|
| Q |
119 |
ttttttgttcatttataatcataacttaacaaagcacagacacaacacacagacaccggaacatgataacttctactaccactgcaaacaatgtcatgtg |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48209 |
ttttttgttcatttataatcataacttaacgaagcacagacacaacacacagacaccggaacatgataacttctactaccactgcaaacaatgtcatgtg |
48308 |
T |
|
| Q |
219 |
gattaattaatttgagtgtgtgttattctttttcttttaggtgatatggaacaagagaggtactttttcagtaccaaagaagccaaatacccaaatggga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48309 |
gattaattaatttgagtgtgtgttattctttttcttttaggtgatatggaacaagagaggtactttttcagtaccaaagaagccaaatacccaaatggga |
48408 |
T |
|
| Q |
319 |
accgatctaacagagctacaaactctggttactggaaagcaactggtttggacaaacaaatcatgaattcaaagactcatgaagttgctggtatgaagaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48409 |
accgatctaacagagctacaaactctggttactggaaagcaactggtttggacaaacaaatcatgaattcaaagactcatgaagttgctggtatgaagaa |
48508 |
T |
|
| Q |
419 |
aactcttgttttctacagaggcaaacctcctcatggttcaagaactgattggatcatgcatgaatatcgcctcacttcttctcactc |
505 |
Q |
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| T |
48509 |
aactcttgttttctacagaggcaaacctcctcatggttcaagaactgattggatcatgcatgaatatcgcctcacttcttctcactc |
48595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 250 - 505
Target Start/End: Complemental strand, 25852282 - 25852027
Alignment:
| Q |
250 |
ttcttttaggtgatatggaacaagagaggtactttttcagtaccaaagaagccaaatacccaaatgggaaccgatctaacagagctacaaactctggtta |
349 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
25852282 |
ttctattaggtgatatggaacaagagaggtactttttcagtactaaagaagccaagtatccaaatgggaactgatctaacagagctagaaaatctggtta |
25852183 |
T |
|
| Q |
350 |
ctggaaagcaactggtttggacaaacaaatcatgaattcaaagactcatgaagttgctggtatgaagaaaactcttgttttctacagaggcaaacctcct |
449 |
Q |
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| T |
25852182 |
ttggaaggaaactggtttggacaaacaaatcatgaattcgaagactcgtgaagttgttggtatgaagaaaactcttgttttctacagaggcaaaccacct |
25852083 |
T |
|
| Q |
450 |
catggttcaagaactgattggatcatgcatgaatatcgcctcacttcttctcactc |
505 |
Q |
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| T |
25852082 |
catggttcaagaactgattggatcatgcatgaatatcgcctcacttcctctcactc |
25852027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 179 - 505
Target Start/End: Original strand, 25851017 - 25851333
Alignment:
| Q |
179 |
acatgataacttctactaccactgcaaacaatgtcatgtggattaattaatttgagtgtgtgttattctttttcttttaggtgatatggaacaagagagg |
278 |
Q |
| |
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||||||||||| ||||||| ||| ||| ||||||| |||||||||||| | |||||||||| |||| || |||||||||||||||||||||| |
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| T |
25851017 |
acatgataactactactactactacaagcaatgtcgtgtggattaatt----tcagtgtgtgttgttctatt------aggtgatatggaacaagagagg |
25851106 |
T |
|
| Q |
279 |
tactttttcagtaccaaagaagccaaatacccaaatgggaaccgatctaacagagctacaaactctggttactggaaagcaactggtttggacaaacaaa |
378 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
25851107 |
tactttttcagtactaaagaagccaagtattcaaatgggaaccgatctaagagagttacaaactctggttactggaaggcaactagtttggacaaacaaa |
25851206 |
T |
|
| Q |
379 |
tcatgaattcaaagactcatgaagttgctggtatgaagaaaactcttgttttctacagaggcaaacctcctcatggttcaagaactgattggatcatgca |
478 |
Q |
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||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
25851207 |
tcatgaatttgaagactcgtgaagttgttggtatgaagaaaactcttgttttctacagaggtaaaccacctcatggttcaagaactgattggatcatgca |
25851306 |
T |
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| Q |
479 |
tgaatatcgcctcacttcttctcactc |
505 |
Q |
| |
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||||||||||||| ||| |||||||| |
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| T |
25851307 |
agaatatcgcctcaattcctctcactc |
25851333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 40364366 - 40364297
Alignment:
| Q |
30 |
tcttctctttccctttacctgcttccatcattcctgaagttgatctttgcaagtctgatccttgggattt |
99 |
Q |
| |
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||||||| | ||| || |||||||||||||||||||| || || ||||||||| ||||||||||||||| |
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| T |
40364366 |
tcttctcatgccccttgcctgcttccatcattcctgaggtcaatgtttgcaagtatgatccttgggattt |
40364297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 492
Target Start/End: Complemental strand, 40363791 - 40363758
Alignment:
| Q |
459 |
agaactgattggatcatgcatgaatatcgcctca |
492 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
40363791 |
agaactgattggatcttgcatgaatatcgcctca |
40363758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 45058999 - 45059027
Alignment:
| Q |
407 |
tggtatgaagaaaactcttgttttctaca |
435 |
Q |
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| T |
45058999 |
tggtatgaagaaaactcttgttttctaca |
45059027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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