View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_7 (Length: 480)
Name: NF2058_high_7
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 31552608 - 31553059
Alignment:
| Q |
11 |
cacagaaaacgcagaaaataaacaagctaagctgaaaacaaatcggcccctacaaaatacagcaggcagaaaccagctgcaacaccaggagaacacagcc |
110 |
Q |
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| T |
31552608 |
cacagaaaacgcagaaaataaacaacctaagctgaaaacaaatcggcccctacaaaatacagcaggcagaaaccagctgcaacaccaggagaacacagcc |
31552707 |
T |
|
| Q |
111 |
aagcaaacccctaaaaaccaccctatctaagaaggcaaatcttaggattctaacatctcatccaaggtgaacgagaccacaaagtcttgtcaatgcaagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31552708 |
aagcaaacccctaaaaaccaccctatctaagaaggcaaatcttaggattctaacatctcatccaaggtgaacgagaccacaaagtcttgtcaatgcaagg |
31552807 |
T |
|
| Q |
211 |
attaaaattaaccatagtgattctatgatcatccaaattatacatacgagcatcataagtatccctaaagtagatgcagttcccttgatatccaattaag |
310 |
Q |
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| T |
31552808 |
attaaaattaaccatagtgattctatgatcatccaaattatacatacgagcatcataagtatccctaaagtagatgcagttcccttgatatccaattaag |
31552907 |
T |
|
| Q |
311 |
tctttagttgaaacagagaagttacaacttttgctcaaaatgaaagctctatctctcaagtttttcacatcaacccattttccccattcttcatccaact |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31552908 |
tctttagttgaaacagagaagttacaacttttgctcaaaatgaaagctctgtctctcaagtttttcacatcaacccattttccccattcttcatccaact |
31553007 |
T |
|
| Q |
411 |
tataaactttgaaacattcaacatcagtgtctcgatcgtagcgtcttctaac |
462 |
Q |
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| T |
31553008 |
tataaactttgaaacattcaacatcagtgtctcgatcgtagcgtcttctaac |
31553059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 161 - 426
Target Start/End: Original strand, 31563149 - 31563414
Alignment:
| Q |
161 |
taacatctcatccaaggtgaacgagaccacaaagtcttgtcaatgcaaggattaaaattaaccatagtgattctatgatcatccaaattatacatacgag |
260 |
Q |
| |
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||||||||||||||| ||||| ||||| |||||||||||||||||||||||| || || || || ||||| ||| ||||||||| || |||||||||| |
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| T |
31563149 |
taacatctcatccaacgtgaatgagacaacaaagtcttgtcaatgcaaggatcaagatcaatggtaatgattatattatcatccaagttgtacatacgag |
31563248 |
T |
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| Q |
261 |
catcataagtatccctaaagtagatgcagttcccttgatatccaattaagtctttagttgaaacagagaagttacaacttttgctcaaaatgaaagctct |
360 |
Q |
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||| | |||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||| ||||||||| |||| |||| || ||||| |
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| T |
31563249 |
cattaaaagtatccttaaagtagatgcaattcccttgatatccaattaattctttagctgaaactgagaaattacaacttctgcttaaaacaaaggctct |
31563348 |
T |
|
| Q |
361 |
atctctcaagtttttcacatcaacccattttccccattcttcatccaacttataaactttgaaaca |
426 |
Q |
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| T |
31563349 |
atctctcaaatttttcacatcaacccatttcccccattcttcatccaacatatgaactttgaaaca |
31563414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 18231771 - 18232011
Alignment:
| Q |
186 |
accacaaagtcttgtcaatgcaaggattaaaattaaccatagtgattctatgatcatccaaattatacatacgagcatcataagtatccctaaagtagat |
285 |
Q |
| |
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|||||||||| ||||| |||||||||||||| | || ||||||||||| ||| |||||||||||||||||| || | ||| |||| |||||||||| |
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| T |
18231771 |
accacaaagtgttgtcgatgcaaggattaaactcgacggtagtgattctacaatcgtccaaattatacatacgaacactaaaagaatccttaaagtagat |
18231870 |
T |
|
| Q |
286 |
gcagttcccttgatatccaattaagtctttagttgaaacagagaagttacaacttttgctcaaaatgaaagctctatctctcaagtttttcacatcaacc |
385 |
Q |
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||| |||||||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||||| ||||||| | |||| | ||||||||||||| |
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| T |
18231871 |
gcaattcccttgatatccaattaattctttagccgaaacggagaagttacaactagggcttaaaatgaaggctctatttttcaaatctttcacatcaacc |
18231970 |
T |
|
| Q |
386 |
cattttccccattcttcatccaacttataaactttgaaaca |
426 |
Q |
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| T |
18231971 |
catttcccccattcttcatccaacttatagactttgaaaca |
18232011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 42193641 - 42193550
Alignment:
| Q |
64 |
aaaatacagcaggcagaaaccagctgcaacaccaggagaacaca-gccaagcaaacccctaaaaaccaccctatctaagaaggcaaatctta |
154 |
Q |
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|||| ||||||||||||||||||| || |||||| |||||| ||| |||||| |||| ||||| |||||||||||||||| |||||||| |
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| T |
42193641 |
aaaaaacagcaggcagaaaccagcggctgcaccagtggaacacttgcccagcaaaaccctcaaaacaaccctatctaagaaggaaaatctta |
42193550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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