View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_high_8 (Length: 475)
Name: NF2058_high_8
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 78 - 277
Target Start/End: Original strand, 27744742 - 27744941
Alignment:
| Q |
78 |
ccaatttttacgatgattatgtgaaatgagnnnnnnntaacagatctgttatcttacttaatcaagagaaaaagagagcttgcctatggtgaccttccaa |
177 |
Q |
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| T |
27744742 |
ccaatttttacgaagattatgtgaaatgagaaaaaaataacagatctgttatcttacttaatcaagagaaaaagagagcatgcctatggtgaccttccaa |
27744841 |
T |
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| Q |
178 |
atcagagaataccaaggatcttctcaaacacccatgcttaaggctttcacaaatgatattaaatcacttagccacaagttaagtatttaactacacaaca |
277 |
Q |
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| T |
27744842 |
atcagagaataccaaggatcttctcaaacacccatgcttaaggctttcacaaatgatattaaatcacttagccacaagttaagtatttaactacacaaca |
27744941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 27745013 - 27745121
Alignment:
| Q |
350 |
cattatggctatttttactgattgttcaatttgcctcgtgcatacacccaaaccgattcttcatatccttagagattgtcataagttgaaagaggtgtgt |
449 |
Q |
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| T |
27745013 |
cattatggctacttttactgattgttcaatttgcctcgtgcatacacccagaccgattcttcttatccttagagattgtcataagttgaaagaggtgtgt |
27745112 |
T |
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| Q |
450 |
gatattagt |
458 |
Q |
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| T |
27745113 |
gatattagt |
27745121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 27743447 - 27743501
Alignment:
| Q |
11 |
cacagatcatatctctaggattggtaacaaagaactatcagatcctataaacatt |
65 |
Q |
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| T |
27743447 |
cacagatcatatctctaggattggtaacaaagaactatcagatcctataaacatt |
27743501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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