View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2058_low_10 (Length: 434)

Name: NF2058_low_10
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2058_low_10
NF2058_low_10
[»] chr8 (13 HSPs)
chr8 (165-416)||(1797678-1797929)
chr8 (9-75)||(1798019-1798085)
chr8 (301-398)||(17944827-17944923)
chr8 (284-391)||(45156354-45156461)
chr8 (301-398)||(39872184-39872280)
chr8 (282-346)||(7130139-7130203)
chr8 (301-392)||(7130618-7130709)
chr8 (301-349)||(45156021-45156069)
chr8 (301-336)||(24190940-24190975)
chr8 (306-346)||(3194548-3194588)
chr8 (317-389)||(23769053-23769124)
chr8 (320-407)||(39870862-39870950)
chr8 (302-346)||(42431681-42431725)
[»] chr2 (6 HSPs)
chr2 (287-404)||(33710842-33710960)
chr2 (301-389)||(3816312-3816398)
chr2 (301-392)||(19004770-19004860)
chr2 (303-401)||(38571608-38571706)
chr2 (301-389)||(42807432-42807519)
chr2 (316-384)||(42882521-42882587)
[»] chr1 (6 HSPs)
chr1 (307-404)||(42294508-42294606)
chr1 (283-391)||(11434710-11434817)
chr1 (321-405)||(37919657-37919742)
chr1 (301-385)||(37920149-37920233)
chr1 (287-346)||(32713210-32713269)
chr1 (320-389)||(44527928-44527996)
[»] chr5 (11 HSPs)
chr5 (302-404)||(14410769-14410872)
chr5 (301-392)||(32804890-32804980)
chr5 (301-401)||(25994488-25994598)
chr5 (287-346)||(25994931-25994990)
chr5 (301-346)||(25868115-25868160)
chr5 (301-346)||(25868506-25868551)
chr5 (287-392)||(17854712-17854818)
chr5 (301-346)||(14410245-14410290)
chr5 (302-400)||(6408594-6408692)
chr5 (318-392)||(26093056-26093139)
chr5 (351-400)||(26092516-26092566)
[»] chr6 (9 HSPs)
chr6 (316-392)||(30746518-30746593)
chr6 (283-346)||(32879699-32879762)
chr6 (301-387)||(1860345-1860430)
chr6 (301-392)||(31778791-31778881)
chr6 (303-380)||(26622267-26622344)
chr6 (303-380)||(26728245-26728322)
chr6 (325-391)||(5741478-5741543)
chr6 (357-389)||(14486366-14486398)
chr6 (306-346)||(32879653-32879693)
[»] scaffold0007 (1 HSPs)
scaffold0007 (301-392)||(186910-187000)
[»] chr7 (6 HSPs)
chr7 (301-392)||(30859810-30859901)
chr7 (301-391)||(42629203-42629292)
chr7 (301-346)||(16488180-16488225)
chr7 (320-384)||(31882911-31882974)
chr7 (302-392)||(36653731-36653820)
chr7 (314-347)||(30665198-30665231)
[»] chr4 (12 HSPs)
chr4 (301-392)||(34981916-34982006)
chr4 (284-346)||(32304761-32304823)
chr4 (302-384)||(55862228-55862309)
chr4 (302-398)||(16936095-16936191)
chr4 (302-387)||(19487485-19487570)
chr4 (296-349)||(40361674-40361727)
chr4 (287-346)||(11660950-11661009)
chr4 (318-389)||(26251445-26251515)
chr4 (301-392)||(34981465-34981555)
chr4 (283-346)||(53260197-53260260)
chr4 (372-405)||(17210556-17210589)
chr4 (315-347)||(4675040-4675072)
[»] scaffold1107 (1 HSPs)
scaffold1107 (296-358)||(1918-1980)
[»] chr3 (3 HSPs)
chr3 (317-385)||(45003345-45003414)
chr3 (301-392)||(36754122-36754213)
chr3 (301-346)||(16280947-16280992)
[»] scaffold0012 (2 HSPs)
scaffold0012 (306-346)||(36236-36276)
scaffold0012 (287-346)||(36171-36230)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 165 - 416
Target Start/End: Complemental strand, 1797929 - 1797678
Alignment:
Q  165 ggatgtattgggaatgagtgcatattcacatgctgctcaggttgacttgatctccctccctcattggttacactcaaaaaacatacggcctcaattgaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797929 ggatgtattgggaatgagtgcatattcacatgctgctcaggttgacttgatctccctccctcattggttacactcaaaaaacatacggcctcaattgaaa 1797830  T
Q  265 ttttgaaaaccagcgtgtgcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaatttt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797829 ttttgaaaaccagcgtgtgcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaatttt 1797730  T
Q  365 acatctgcgttagttaactaacgcagggtattttcggcaagacggtagggtg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797729 acatctgcgttagttaactaacgcagggtattttcggcaagacggtagggtg 1797678  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 1798085 - 1798019
Alignment:
Q  9 agcacagaataaaaaattgattggaatagaaacaaaaaatcaaacacgaattacacaataagaaggc 75  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1798085 agcacaaaataaaaaattgattggaatagaaacaaaaaatcaaacacgaattacacaataagaaggc 1798019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 398
Target Start/End: Original strand, 17944827 - 17944923
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcagggtatttt 398  Q
    ||||||||||| | ||||||| ||||||||||||||||||| ||||||| |||| |||  |||||||  || |||||||||||||||||| |||||||    
T  17944827 gtgagttaactcatgcagcgttacttaagtcacacatgtgt-aaaattaagtcacgtttgttttacacatgtgttagttaactaacgcagagtatttt 17944923  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 45156354 - 45156461
Alignment:
Q  284 catgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaact 383  Q
    ||||||||||||| || ||||| ||||| | ||||||||||||||||||| |||||||||||||||  |   |||  |||||||  || |||||||||||    
T  45156354 catgtgttaattccagcgtgagataactcaagcagcgtgacttaagtcacgcatgtgtaaaaattaaattccgttttttttacacttgtgttagttaact 45156453  T
Q  384 aacgcagg 391  Q
    ||||||||    
T  45156454 aacgcagg 45156461  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 398
Target Start/End: Original strand, 39872184 - 39872280
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcagggtatttt 398  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| |||  |||  |||||||  ||||||||||||  | |||||| ||||||    
T  39872184 gtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaattaagtcccgtt-tttttacacttgcgttagttaatcagcgcaggatatttt 39872280  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 7130203 - 7130139
Alignment:
Q  282 tgcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||| ||||| |||| || ||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  7130203 tgcaagtgttcattccagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaa 7130139  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 7130618 - 7130709
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| | ||||||||||||||||||| |||| ||||||| || ||| | |   |||||||  ||||||||||||||||| |||||    
T  7130618 gtgagttaactcatgcagcgtgacttaagtcacgcatgcgtaaaaactaagtcgtttattttttacacttgcgttagttaactaacacaggg 7130709  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 45156069 - 45156021
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaatta 349  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||||||    
T  45156069 gtgagttaactcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 45156021  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 24190940 - 24190975
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacaca 336  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24190940 gtgagttaactcacgcagcgtgacttaagtcacaca 24190975  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 3194588 - 3194548
Alignment:
Q  306 ttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||| ||||| |||||||||||||||||| |||||||||    
T  3194588 ttaactaacgcaacgtgacttaagtcacacacgtgtaaaaa 3194548  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 23769053 - 23769124
Alignment:
Q  317 agcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca 389  Q
    ||||||| |||||| | ||||||||||||| || |||| |||  |||||||| ||||||||||||||| ||||    
T  23769053 agcgtgagttaagtaatacatgtgtaaaaactaagtcacgttt-ttttacatttgcgttagttaactagcgca 23769124  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 39870950 - 39870862
Alignment:
Q  320 gtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgc-agggtattttcggcaagac 407  Q
    |||| ||||||||| ||||||||||||||| ||   |||  |||||||  ||||||||||||||| ||| ||| |||||| ||||||||    
T  39870950 gtgatttaagtcacgcatgtgtaaaaattaagttccgttttttttacacttgcgttagttaactagcgcaaggatattttgggcaagac 39870862  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 42431725 - 42431681
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||    
T  42431725 tgagttaactcatgcagcatgacttaagtcacgcatgtgtaaaaa 42431681  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 33710960 - 33710842
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaac 386  Q
    |||||||||  || ||||||||||| ||||||||||||||||||||| |||||||||||||||  ||| ||   |||||||  ||||||||||||||| |    
T  33710960 gtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtgtaaaaattaactcacgtattttttacacttgcgttagttaactagc 33710861  T
Q  387 gca-gggtattttcggcaa 404  Q
    ||| ||||||||| |||||    
T  33710860 gcaggggtatttttggcaa 33710842  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 3816312 - 3816398
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca 389  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||  ||  |||||||  |||||||||||| |||||||    
T  3816312 gtgagttaactcacgcagcgtgacttaagtcacacatatgtaaaaattaagtcaattt--ttttacacttgcgttagttaattaacgca 3816398  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 19004860 - 19004770
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| | || |||||||||||||||| ||||||| ||||||| ||||||||   ||||||  ||||||||||||||| |||||||    
T  19004860 gtgagttaactcatgcggcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacttgcgttagttaactagcgcaggg 19004770  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 38571706 - 38571608
Alignment:
Q  303 gagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca-gggtattttcgg 401  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| ||| | ||||||   ||||||| |||| |||||||||| || | ||||||||||||    
T  38571706 gagttaactcatgcagcgtgacttaagtcacacatgtgt-aaatttaagacatgtttgatttacatttgcgctagttaactagcgtaggggtattttcgg 38571608  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 42807519 - 42807432
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgta-aaaattatgtcatgttaattttacatctgcgttagttaactaacgca 389  Q
    ||||||||||| | || ||||||||||||||||  ||||||| |||| || ||||||||  |||||||  ||||||||||||||||||||    
T  42807519 gtgagttaactcatgcggcgtgacttaagtcacgtatgtgtaaaaaactaagtcatgtt--ttttacacttgcgttagttaactaacgca 42807432  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 42882587 - 42882521
Alignment:
Q  316 cagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaacta 384  Q
    |||||||||||||||||| |||||||||||| || ||||  ||  |||||||  |||||||||||||||    
T  42882587 cagcgtgacttaagtcacgcatgtgtaaaaactaagtcaattt--ttttacacttgcgttagttaacta 42882521  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 42294508 - 42294606
Alignment:
Q  307 taacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgc-agggtattttcggcaa 404  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||||   |||||||  |||| || ||||||||||| ||||||||||||||||    
T  42294508 taactcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtcatgtattttttacacttgcgctaattaactaacgcaagggtattttcggcaa 42294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 11434817 - 11434710
Alignment:
Q  283 gcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaac 382  Q
    |||||||||||||| || ||||||||||| |||||| |||||||||||||  |||||||||||| || ||||  ||  |||||||  |||||||||||||    
T  11434817 gcatgtgttaattccagcgtgagttaactcacgcagtgtgacttaagtcaggcatgtgtaaaaactaagtca-attttttttacacttgcgttagttaac 11434719  T
Q  383 taacgcagg 391  Q
    || ||||||    
T  11434718 tagcgcagg 11434710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 37919742 - 37919657
Alignment:
Q  321 tgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca-gggtattttcggcaag 405  Q
    ||||||||||||| |||||||||||| || || ||||||||||||||  | ||||||||||||| |||| ||| ||||||||||||    
T  37919742 tgacttaagtcacgcatgtgtaaaaactaagttatgttaattttacacatacgttagttaactagcgcatgggcattttcggcaag 37919657  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 37920149 - 37920233
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaa 385  Q
    ||||||||||| |||  |||||| ||||||||| |||||||||||| || || || ||||||||| || | ||||||||||||||    
T  37920149 gtgagttaactcacgttgcgtgatttaagtcacgcatgtgtaaaaactaagttatattaattttatatttacgttagttaactaa 37920233  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 32713269 - 32713210
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||  |||||| ||||    
T  32713269 gtgttaattttagcgtgagttaactcacgcagcgtgacttaagtcacgtatgtgttaaaa 32713210  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 44527996 - 44527928
Alignment:
Q  320 gtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca 389  Q
    |||||||||||||| ||||||||||| ||| ||||||||   ||||||  ||||||||||||||||||||    
T  44527996 gtgacttaagtcacgcatgtgtaaaa-ttaagtcatgtttgatttacacatgcgttagttaactaacgca 44527928  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 14410769 - 14410872
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca-gggtattttcg 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || |||| |    |||||||   |||||||||||||| |||| |||||||||||    
T  14410769 tgagttaactcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtcacgaattttttacactcgcgttagttaactagcgcaggggtattttcg 14410868  T
Q  401 gcaa 404  Q
    ||||    
T  14410869 gcaa 14410872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 32804890 - 32804980
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcat-gttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||  |||| ||  |||||||||||| |||||| ||||||||| ||||||    
T  32804890 gtgagttaactcacgcggcgtgacttaagtcacacatgtgtaaaaa--atgtaatccttaattttacatttgcgttggttaactaatgcaggg 32804980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 25994598 - 25994488
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa---------ttatgtcatgttaattttacatctgcgttagttaactaacgca-g 390  Q
    ||||||||||| | || |||||||||||||||| ||||||||||||         |||||||||||||||||||||  ||| |||||||||||||||| |    
T  25994598 gtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaaaatgaaactttatgtcatgttaattttacacttgcattagttaactaacgcagg 25994499  T
Q  391 ggtattttcgg 401  Q
    |||||||||||    
T  25994498 ggtattttcgg 25994488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 25994931 - 25994990
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||| | ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  25994931 gtgttaattctcgcgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaaa 25994990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 25868160 - 25868115
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  25868160 gtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaa 25868115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 25868506 - 25868551
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  25868506 gtgagttaacttatgcagcgtgacttaagtcacgcatgtgtaaaaa 25868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 17854712 - 17854818
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatg-ttaattttacatctgcgttagttaactaa 385  Q
    |||||||||  || ||||||||||| |||||| ||||| |||||||| |||||||||||| ||  ||| | ||  |||||||  ||||||||||||||||    
T  17854712 gtgttaatttcagcgtgagttaactcacgcagtgtgacctaagtcacgcatgtgtaaaaactaactcaagtttttttttacacttgcgttagttaactaa 17854811  T
Q  386 cgcaggg 392  Q
    | |||||    
T  17854812 cacaggg 17854818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 14410290 - 14410245
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  14410290 gtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaa 14410245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 6408692 - 6408594
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa-ttatgtcatgttaattttacatctgcgttagttaactaacgca-gggtattttc 399  Q
    |||||||||| | ||||||||||||||||||| |||||||||||| ||| |||| |||  ||||||   | |||||||||||||||||| ||||||||||    
T  6408692 tgagttaact-atgcagcgtgacttaagtcacgcatgtgtaaaaaattaagtcacgttt-ttttacgcttacgttagttaactaacgcaggggtattttc 6408595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 26093056 - 26093139
Alignment:
Q  318 gcgtgacttaagtcacacatgtgtaaaaa---------ttatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    |||||||||||||||||||||||||||||         ||| |||||||||||||||||  |||||| |||||||| |||||||    
T  26093056 gcgtgacttaagtcacacatgtgtaaaaaaatgaaattttaagtcatgttaattttacacttgcgttggttaactagcgcaggg 26093139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 26092566 - 26092516
Alignment:
Q  351 gtcatgttaattttacatctgcgttagttaactaacgc-agggtattttcg 400  Q
    |||||||||||||||||  ||||||||||||||| ||| ||||||||||||    
T  26092566 gtcatgttaattttacacttgcgttagttaactagcgcaagggtattttcg 26092516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 30746518 - 30746593
Alignment:
Q  316 cagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||   ||||||  |||||||||||||||||||||||    
T  30746518 cagcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacgtgcgttagttaactaacgcaggg 30746593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 32879762 - 32879699
Alignment:
Q  283 gcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||||||||||  || ||||||||||| ||||||||||||||||||||| || |||||||||    
T  32879762 gcatgtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgtaaaaa 32879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 1860430 - 1860345
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacg 387  Q
    ||||||||||||| |  |||||||||||||||| ||||||| ||||||| ||||||||   ||||||  ||||||||||||||||||    
T  1860430 gtgagttaacttatgttgcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacatgcgttagttaactaacg 1860345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 31778881 - 31778791
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| | || |||||||||||||||| ||||||| ||||||| |||| |||   ||||||  ||||||||||||||| |||||||    
T  31778881 gtgagttaactcatgcggcgtgacttaagtcacgcatgtgt-aaaattaagtcacgtttgatttacacatgcgttagttaactagcgcaggg 31778791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 26622267 - 26622344
Alignment:
Q  303 gagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagtta 380  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| ||||  | | |||  |||||||| |||||||||||    
T  26622267 gagttaacttacgcagcatgatttatgtcacacatgtgtaaagattaaattaagttttttttacatttgcgttagtta 26622344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 26728245 - 26728322
Alignment:
Q  303 gagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagtta 380  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| ||||  | | |||  |||||||| |||||||||||    
T  26728245 gagttaacttacgcagcatgatttatgtcacacatgtgtaaagattaaattaagttttttttacatttgcgttagtta 26728322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 5741478 - 5741543
Alignment:
Q  325 ttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcagg 391  Q
    ||||||||||||||||||| ||||| ||||  ||  |||||||  ||||||||||||||||||||||    
T  5741478 ttaagtcacacatgtgtaataattaagtcaatttt-ttttacacttgcgttagttaactaacgcagg 5741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 14486398 - 14486366
Alignment:
Q  357 ttaattttacatctgcgttagttaactaacgca 389  Q
    |||||||||||| ||||||||||||||||||||    
T  14486398 ttaattttacatttgcgttagttaactaacgca 14486366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 32879653 - 32879693
Alignment:
Q  306 ttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||| |||||||||||||||||||| ||| |||||||||    
T  32879653 ttaactaacgcagcgtgacttaagtcaaacacgtgtaaaaa 32879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 187000 - 186910
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||||| ||||||||   ||||||  | |||||||||| || |||||||    
T  187000 gtgagttaactcatgcaacgtgacttaagtcacacatgtgt-aaaattaagtcatgtttgatttacacatacgttagttaattagcgcaggg 186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 30859901 - 30859810
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||| || |||  |||  |||||||  ||||||||||||||  |||||||    
T  30859901 gtgagttaactcacgcggcgtgacttaagtcatgcatgtgtaaaaactaagtcccgttttttttacacttgcgttagttaacttgcgcaggg 30859810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 42629203 - 42629292
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcagg 391  Q
    ||||||||||| | ||||||||||||||||||  ||||||| ||||||| |||||||    ||||||  |||||||||||||||| |||||    
T  42629203 gtgagttaactcatgcagcgtgacttaagtcatgcatgtgt-aaaattaagtcatgtatgatttacacatgcgttagttaactaatgcagg 42629292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 16488180 - 16488225
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||    
T  16488180 gtgaattaactcatgcagcgtgacttaagtcacacatgtgtaaaaa 16488225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 31882911 - 31882974
Alignment:
Q  320 gtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaacta 384  Q
    |||||||||||||| ||||||| ||||||| | |||||| ||||||||  |||||||||||||||    
T  31882911 gtgacttaagtcacgcatgtgt-aaaattaagacatgtttattttacacatgcgttagttaacta 31882974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 36653731 - 36653820
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||   ||||||||||||||||||| ||| | ||||| ||| |||| |||   ||||||  |||||||||||||||||||||||    
T  36653731 tgagttaactcttgcagcgtgacttaagtcacgcatatataaaa-ttaagtcacgtttgatttacacatgcgttagttaactaacgcaggg 36653820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 30665231 - 30665198
Alignment:
Q  314 cgcagcgtgacttaagtcacacatgtgtaaaaat 347  Q
    |||||||||||||||||||| |||||||||||||    
T  30665231 cgcagcgtgacttaagtcacgcatgtgtaaaaat 30665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 34981916 - 34982006
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||| ||||| | || |||||||||||||||||||||||| ||||||| ||||||||   ||||||  | |||||||||||||| ||||||    
T  34981916 gtgagataactcatgcggcgtgacttaagtcacacatgtgt-aaaattaagtcatgtttgatttacacatacgttagttaactaatgcaggg 34982006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 32304761 - 32304823
Alignment:
Q  284 catgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||||  || ||||||||||| || |||| ||||||||||||| ||||||||||||    
T  32304761 catgtgttaatttcagcgtgagttaactcacccagcatgacttaagtcacgcatgtgtaaaaa 32304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 55862309 - 55862228
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaacta 384  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||||| |||| ||  ||||||||  || ||||||||||||    
T  55862309 tgagttaacttatgcggcgtgacttaagtcacatatgtgt-aaaattaagtcacgtatattttacacatgagttagttaacta 55862228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 16936095 - 16936191
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgc-agggtatttt 398  Q
    |||||||||| | || |||||||||||||||||||||| |||||| || |||  |||  |||||||  ||||||||||||||| ||| ||||||||||    
T  16936095 tgagttaactcatgcggcgtgacttaagtcacacatgtctaaaaactaagtctcgtt-tttttacacttgcgttagttaactagcgcaagggtatttt 16936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 19487570 - 19487485
Alignment:
Q  302 tgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacg 387  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||| || |||| ||   ||||| |  || |||||||||||||||    
T  19487570 tgagttaactcacgcagcgtgagttaagtcacgcatgtgtaaaaactaagtcacgtattttttatacttgtgttagttaactaacg 19487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 40361674 - 40361727
Alignment:
Q  296 ctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaatta 349  Q
    |||| ||||||||||| |||  |||||||||||||||| |||||||||||||||    
T  40361674 ctagcgtgagttaactcacgtggcgtgacttaagtcacgcatgtgtaaaaatta 40361727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 11660950 - 11661009
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||||||  || ||||||||||| || |||||||||||||||||| || |||||||||    
T  11660950 gtgttaatttcagcgtgagttaactcacacagcgtgacttaagtcacgcaagtgtaaaaa 11661009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 26251515 - 26251445
Alignment:
Q  318 gcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgca 389  Q
    |||||||||||||||| ||||||| ||||||| ||||||||   ||||||  ||||||||||||||| ||||    
T  26251515 gcgtgacttaagtcacgcatgtgt-aaaattaagtcatgtttgatttacacatgcgttagttaactagcgca 26251445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 34981555 - 34981465
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||||| ||  |||||||||| | || ||| ||||||| ||| ||||||||   ||||||  |||||||||||||||||||||||    
T  34981555 gtgagttaacttatgcgacgtgacttaactgacgcatatgtaaaa-ttaagtcatgtttgatttacacatgcgttagttaactaacgcaggg 34981465  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 53260197 - 53260260
Alignment:
Q  283 gcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||||||||||   | ||| ||||||| |||||||||||||||||||||  |||||||||||    
T  53260197 gcatgtgttaatttcggcgtgggttaactcacgcagcgtgacttaagtcacgtatgtgtaaaaa 53260260  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 17210589 - 17210556
Alignment:
Q  372 cgttagttaactaacgcagggtattttcggcaag 405  Q
    ||||| ||||||||||||||||||||||||||||    
T  17210589 cgttatttaactaacgcagggtattttcggcaag 17210556  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 4675072 - 4675040
Alignment:
Q  315 gcagcgtgacttaagtcacacatgtgtaaaaat 347  Q
    ||||||||||||||||||| |||||||||||||    
T  4675072 gcagcgtgacttaagtcacgcatgtgtaaaaat 4675040  T

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Target: scaffold1107 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 1918 - 1980
Alignment:
Q  296 ctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgtt 358  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||| |||||||| || ||||||||    
T  1918 ctagcgtgagttaactcacgcaacgtgacttaagtcacgcatctgtaaaaactaagtcatgtt 1980  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 45003414 - 45003345
Alignment:
Q  317 agcgtgacttaagtcacacatgtgtaaaaattatgtcatgt-taattttacatctgcgttagttaactaa 385  Q
    ||||||| ||||||||| ||||||||||||||| ||||||| || |||||||  | ||||||||||||||    
T  45003414 agcgtgatttaagtcacgcatgtgtaaaaattaagtcatgtatagttttacacttccgttagttaactaa 45003345  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 36754122 - 36754213
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgtcatgttaattttacatctgcgttagttaactaacgcaggg 392  Q
    ||||||||||| ||||| |||||||||||| ||  |||| |||||| || ||||  ||  | |||||  |||||||||||||||||||||||    
T  36754122 gtgagttaactcacgcaacgtgacttaagttacgtatgtataaaaactaagtcaattttttcttacacttgcgttagttaactaacgcaggg 36754213  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 16280947 - 16280992
Alignment:
Q  301 gtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    ||||||||||| |||| |||||||||||||||| || |||||||||    
T  16280947 gtgagttaactcacgcggcgtgacttaagtcacgcaagtgtaaaaa 16280992  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 36276 - 36236
Alignment:
Q  306 ttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  36276 ttaactaacgcagcgtgacttaagtcacacacgtgtaaaaa 36236  T

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Target: scaffold0012; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 36171 - 36230
Alignment:
Q  287 gtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 346  Q
    |||||||||| || |||||||| || |||||||||||||||||||||  | |||||||||    
T  36171 gtgttaattccagcgtgagttagctcacgcagcgtgacttaagtcacgtaagtgtaaaaa 36230  T

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