View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2058_low_11 (Length: 426)
Name: NF2058_low_11
Description: NF2058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2058_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 6347885 - 6347554
Alignment:
| Q |
19 |
atagcatcgtctctctcaagtgtgaaactatctatgttcttgatcccacaccaactcatcaatcaaattgaatcatgactctgatagcaatgttaaacca |
118 |
Q |
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| T |
6347885 |
atagcatcgtctctctcaagtgtgaaactatctatgttcttgatcccacaccaactcatcaatcaaattgaatcatgactctgatagcaatgttaaacca |
6347786 |
T |
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| Q |
119 |
tgagtgagatcctcactaagtcggatcattacattgagctcattaggtctgatttnnnnnnngaaccaatttcttatggtaaaatgagtagttgaaagag |
218 |
Q |
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| T |
6347785 |
tgagtgagatcctcgctaagtcggatcattacattgagctcattaggtctgatttaaaaaaagaaccaatttcttatggtaaaatgagtagttgaaagag |
6347686 |
T |
|
| Q |
219 |
ttagcaannnnnnnnnnnnnngagagagttagcaattttgtttgtgcaaaaattacatgttgaggaatacaattttatgttgaaattgtggatttatgca |
318 |
Q |
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| T |
6347685 |
ttagcaatttttattttttttgagagagttagcaattttgtttgtgcaaaaattacatgttgaggaatacaattttatgttgaaattgtggatttatgca |
6347586 |
T |
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| Q |
319 |
tgaagtgttgaaccacaatcaatttaaaagct |
350 |
Q |
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| T |
6347585 |
tgaagtgttgaaccacaatcaatttaaaagct |
6347554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 6331640 - 6331555
Alignment:
| Q |
266 |
aaaaattacatgttgaggaatacaattttatgttgaaattgtggatttatgcatgaagtgttgaaccacaatcaatttaaaagcta |
351 |
Q |
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| T |
6331640 |
aaaaattgtatgttgaggaatacaatcttatgttgaaattgtggatttacgcatgaagtgttgaacgataatcaatttaaaagcta |
6331555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 6331901 - 6331750
Alignment:
| Q |
27 |
gtctctctcaagtgtgaaactatctatgttcttgatcccacaccaa------------ctcatcaatcaaattgaatcatgactctgatagcaatgttaa |
114 |
Q |
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|||||||| || ||||||||| |||||||||||||||||||||||| ||| || ||| | | ||||||||||| ||||| ||||||| | |
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| T |
6331901 |
gtctctcttaactgtgaaactctctatgttcttgatcccacaccaagaatctcttttgctcctccatcgagtcgaatcatgactttgataccaatgttca |
6331802 |
T |
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| Q |
115 |
accatgagtgagatcctcactaagtcggatcattacattgagctcattaggt |
166 |
Q |
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| T |
6331801 |
accatgagtgagattctcacttagttcgatcattacattgagctcattaggt |
6331750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 6331523 - 6331488
Alignment:
| Q |
383 |
gtggttgtgcttccgctttgtagatattttcttctc |
418 |
Q |
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| T |
6331523 |
gtggttgtgcttccgctttgtagatattttcttctc |
6331488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 6347522 - 6347487
Alignment:
| Q |
383 |
gtggttgtgcttccgctttgtagatattttcttctc |
418 |
Q |
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| T |
6347522 |
gtggttgtgcttccgctttgtagatattttcttctc |
6347487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 28555104 - 28555136
Alignment:
| Q |
383 |
gtggttgtgcttccgctttgtagatattttctt |
415 |
Q |
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| T |
28555104 |
gtggttgtgcttccgctttgtagaaattttctt |
28555136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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